Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025539.1-P | Field mustard | nucleus | 71.03 | 82.73 |
| CDY36389 | Canola | nucleus | 56.21 | 66.26 |
| AT5G40860.1 | Thale cress | nucleus | 32.07 | 37.8 |
| CDY34170 | Canola | nucleus, plastid | 28.97 | 34.71 |
| CDY28483 | Canola | nucleus, plastid | 27.59 | 33.2 |
| CDX83668 | Canola | nucleus | 27.93 | 32.93 |
| CDY13691 | Canola | nucleus | 25.52 | 28.91 |
| HORVU2Hr1G068780.1 | Barley | cytosol, nucleus | 13.1 | 25.68 |
| TraesCS2A01G280800.1 | Wheat | mitochondrion, nucleus | 15.52 | 24.32 |
| TraesCS2D01G279600.1 | Wheat | mitochondrion, nucleus | 15.17 | 24.04 |
| VIT_14s0171g00120.t01 | Wine grape | nucleus | 20.34 | 23.89 |
| KRH57661 | Soybean | nucleus | 17.59 | 23.83 |
| Zm00001d004015_P001 | Maize | nucleus | 14.48 | 22.95 |
| CDX74323 | Canola | nucleus, plastid | 16.9 | 22.79 |
| TraesCS3D01G423100.1 | Wheat | nucleus | 17.93 | 22.71 |
| Os01t0920100-01 | Rice | nucleus | 17.93 | 22.51 |
| TraesCS3A01G427500.1 | Wheat | nucleus | 17.93 | 22.41 |
| GSMUA_Achr10P... | Banana | nucleus | 17.93 | 22.41 |
| GSMUA_Achr7P22880_001 | Banana | nucleus, plastid | 17.93 | 22.41 |
| TraesCS2B01G298200.2 | Wheat | mitochondrion, nucleus | 14.48 | 22.11 |
| GSMUA_Achr5P25150_001 | Banana | nucleus | 17.93 | 21.58 |
| Zm00001d012031_P001 | Maize | nucleus | 16.9 | 21.49 |
| EES12001 | Sorghum | nucleus | 14.14 | 21.47 |
| EES01966 | Sorghum | nucleus | 16.9 | 21.4 |
| CDX91922 | Canola | plastid | 15.86 | 21.3 |
| HORVU3Hr1G094210.2 | Barley | nucleus | 16.9 | 21.12 |
| KRG94300 | Soybean | nucleus | 16.21 | 20.98 |
| TraesCS3B01G464600.1 | Wheat | nucleus | 16.55 | 20.87 |
| Zm00001d042341_P001 | Maize | nucleus | 16.55 | 20.34 |
| GSMUA_Achr6P20760_001 | Banana | nucleus | 14.14 | 19.62 |
| KRG94493 | Soybean | peroxisome | 15.86 | 18.78 |
| KRH06973 | Soybean | nucleus | 15.86 | 18.47 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.83 | 16.17 |
| Os04t0380200-01 | Rice | mitochondrion, plastid | 15.52 | 15.68 |
| GSMUA_Achr6P12330_001 | Banana | plastid | 14.48 | 13.86 |
Protein Annotations
| EnsemblPlants:CDY52698 | EnsemblPlantsGene:GSBRNA2T00007614001 | InterPro:At3g27210-like | PANTHER:PTHR34280 | PANTHER:PTHR34280:SF2 | ProteinID:CDY52698 |
| ProteinID:CDY52698.1 | SEG:seg | UniParc:UPI0004EF45CA | UniProt:A0A078IUK5 | MapMan:35.1 | : |
Description
BnaA04g10670DBnaA04g10670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUK5]
Coordinates
chrLK033119:-:19408..22572
Molecular Weight (calculated)
32643.9 Da
IEP (calculated)
10.088
GRAVY (calculated)
-1.080
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: METLTMAIPE SLMKDNYSIP VDNSPEKGEE NGYVQDKPSF TSSSAKKTSE SPVKENLTPS ATRTTAPSEI SPSVTQMKYR WSFSSSKRSF GSSKDEAFFD
101: TNQWLQSDSE DDFFSVNGEF TPSRGNTPKC SFSDKHPRFH NPLFEEEKPR AASFSYAPAP RRKKLAELFR ESDTTEYKSL KKKLGPSVVT GHKGNNTIPG
201: QRRRSWKRGF PIWNFEKVVY ETIQAVRASS GTRGDQHVGG SGEGRKRTGR RRHDEREESP TPMKLGNLFK GKRAEQMNGS CGGDPWRCLS
101: TNQWLQSDSE DDFFSVNGEF TPSRGNTPKC SFSDKHPRFH NPLFEEEKPR AASFSYAPAP RRKKLAELFR ESDTTEYKSL KKKLGPSVVT GHKGNNTIPG
201: QRRRSWKRGF PIWNFEKVVY ETIQAVRASS GTRGDQHVGG SGEGRKRTGR RRHDEREESP TPMKLGNLFK GKRAEQMNGS CGGDPWRCLS
001: MISHDSFPMN NSPVTAEENG GVTEKSIQEN GGVTEKSIFL SPSTKKISES PVKENLAPVA TPKTVDNGLS AQVKSRWSFS SSKRSFGSSK DETYFDSHQW
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK
101: QQSDSEDDFY SVRGDFTPSV GNTPRCSISE KLPRIHSPLF EGEKPRVSFS HSPAPRRKKL GELFRDSIRE ERAVILEESS EYQSEKSKKS SCDNSGELKV
201: IEESVKEKKN LKSPLNYHHR CLPRFSSFKG SLMDKRKKKK KKIHVK
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.