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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 7
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 extracellular: 25724908
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02880.1 KRG89812 AT2G41090.1 17360592
AT3G02880.1 KRG94975 AT2G41090.1 17360592
AT3G02880.1 KRH18664 AT2G41090.1 17360592
AT3G02880.1 KRG89812 AT5G21274.1 17360592
AT3G02880.1 KRG94975 AT5G21274.1 17360592
AT3G02880.1 KRH18664 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH17350 Soybean extracellular 92.16 90.38
Os03t0712400-02 Rice plasma membrane 22.06 60.0
VIT_14s0006g01080.t01 Wine grape plasma membrane 60.29 57.75
GSMUA_Achr3P02160_001 Banana plasma membrane 43.79 55.72
Solyc11g011020.1.1 Tomato nucleus 57.52 54.83
KRH63039 Soybean cytosol 23.53 54.55
PGSC0003DMT400040459 Potato plasma membrane 57.19 54.1
KRH41871 Soybean endoplasmic reticulum 57.35 54.08
KRH60559 Soybean endoplasmic reticulum 57.84 53.96
GSMUA_Achr3P07440_001 Banana plasma membrane 44.93 53.09
Bra021408.1-P Field mustard plasma membrane 52.12 52.38
CDY49655 Canola plasma membrane 52.45 52.03
GSMUA_Achr2P21610_001 Banana plasma membrane 50.98 51.57
Bra008611.1-P Field mustard plasma membrane 51.8 51.38
Zm00001d048053_P001 Maize plasma membrane 56.05 51.27
CDY38103 Canola plasma membrane 51.31 51.22
AT3G02880.1 Thale cress plasma membrane 52.45 51.2
CDX69441 Canola plasma membrane 51.63 51.13
CDY51524 Canola plasma membrane 51.8 51.13
Bra023574.1-P Field mustard plasma membrane 51.14 51.06
CDX85498 Canola plasma membrane 51.14 51.06
CDY28719 Canola plasma membrane 50.33 50.99
Bra040609.1-P Field mustard plasma membrane 51.8 50.88
Zm00001d048054_P002 Maize mitochondrion, plasma membrane 55.72 50.74
GSMUA_Achr8P23000_001 Banana plasma membrane 45.75 50.72
EER95247 Sorghum plasma membrane 55.72 50.59
AT5G16590.1 Thale cress plasma membrane 51.31 50.24
GSMUA_Achr10P... Banana plasma membrane 47.22 50.17
GSMUA_Achr6P05910_001 Banana extracellular, plasma membrane, vacuole 46.08 50.09
Os03t0223000-02 Rice plasma membrane 54.9 49.78
KRH48661 Soybean nucleus 55.07 49.27
TraesCS4D01G241100.1 Wheat plasma membrane 53.76 48.89
KRH39040 Soybean plasma membrane 51.31 48.01
GSMUA_Achr9P15690_001 Banana plasma membrane 43.79 47.86
TraesCS4A01G064200.1 Wheat plasma membrane 52.78 47.36
GSMUA_Achr7P11160_001 Banana plasma membrane 41.01 47.0
TraesCS4D01G046900.1 Wheat plasma membrane 51.47 46.94
TraesCS4B01G047100.1 Wheat plasma membrane 51.63 46.81
HORVU4Hr1G007550.1 Barley plasma membrane 50.65 46.41
TraesCS4A01G267300.1 Wheat plasma membrane 50.65 46.06
TraesCS4B01G241500.1 Wheat plasma membrane 47.39 46.03
EER90996 Sorghum plasma membrane 50.82 44.68
Zm00001d033745_P001 Maize plasma membrane 50.33 44.38
KRH03778 Soybean endoplasmic reticulum 46.73 44.0
KRH56662 Soybean plasma membrane 44.93 43.04
TraesCS2B01G344900.1 Wheat plasma membrane 45.75 41.98
KRH54823 Soybean nucleus 44.77 41.96
TraesCS2A01G337000.1 Wheat plasma membrane 45.75 41.85
TraesCS2D01G325900.1 Wheat plasma membrane 45.42 41.55
Zm00001d013430_P001 Maize mitochondrion 48.86 41.3
Os04t0463000-01 Rice plasma membrane 44.93 41.11
KXG26481 Sorghum plasma membrane 45.1 41.07
TraesCS5D01G210800.1 Wheat plasma membrane 43.14 40.74
TraesCS5A01G205500.1 Wheat plasma membrane 43.14 40.55
KRH72840 Soybean nucleus 43.3 40.52
HORVU0Hr1G012920.2 Barley cytosol 33.66 40.39
TraesCS7D01G216400.1 Wheat plasma membrane 41.99 40.09
Zm00001d003399_P001 Maize mitochondrion, plasma membrane 44.28 40.03
TraesCS5B01G202900.1 Wheat plasma membrane 42.65 39.97
Os09t0400500-01 Rice plasma membrane 42.32 39.97
TraesCS7A01G214300.1 Wheat plasma membrane 41.83 39.94
Zm00001d020403_P001 Maize plasma membrane 41.83 39.94
KRH00489 Soybean plasma membrane 39.54 39.87
KRH64226 Soybean plasma membrane 41.67 39.84
KRH53701 Soybean plasma membrane 41.67 39.72
KRH40666 Soybean plasma membrane 39.38 39.7
KRH17210 Soybean nucleus 42.48 39.69
HORVU7Hr1G043470.2 Barley plasma membrane 41.5 39.69
TraesCS7B01G121600.1 Wheat plasma membrane 41.5 39.63
KRG98109 Soybean mitochondrion 43.14 39.52
HORVU4Hr1G066900.1 Barley plasma membrane 34.48 39.37
KRH30670 Soybean plasma membrane 42.81 39.05
KRH60009 Soybean plasma membrane 39.05 38.86
EES15012 Sorghum plasma membrane 41.5 38.78
HORVU2Hr1G080770.4 Barley mitochondrion, plasma membrane, plastid 38.89 38.76
KRH27860 Soybean plasma membrane 36.93 38.37
KXG35590 Sorghum plasma membrane 40.36 37.83
Zm00001d032244_P001 Maize plasma membrane 41.34 37.7
KRH16952 Soybean plasma membrane 40.03 37.69
KRH35919 Soybean plasma membrane 40.85 37.2
KRH72555 Soybean plasma membrane 39.38 37.19
KRH41279 Soybean plasma membrane 38.4 36.83
Zm00001d050355_P001 Maize plasma membrane 41.67 36.69
KRH64513 Soybean plasma membrane 37.91 36.65
KRH15987 Soybean plasma membrane 36.93 36.28
KRH53424 Soybean plasma membrane 37.42 36.18
KRH18126 Soybean plasma membrane 34.64 35.87
KRG94239 Soybean vacuole 37.42 35.67
KRH77622 Soybean plasma membrane 36.6 35.28
Os08t0427600-00 Rice golgi, plasma membrane 25.82 35.27
KRH38161 Soybean plasma membrane 37.75 35.11
KRH67820 Soybean plasma membrane 37.25 33.83
KRH20013 Soybean plasma membrane 37.25 33.14
KRG90862 Soybean mitochondrion 34.48 31.49
KRH32636 Soybean plasma membrane 37.25 31.02
KRG96115 Soybean plasma membrane 36.44 30.84
KRH29251 Soybean plasma membrane, vacuole 31.86 29.86
KRH24246 Soybean plasma membrane 32.19 29.54
KRH57812 Soybean golgi, plasma membrane, plastid 30.72 29.19
KRH04550 Soybean plasma membrane 30.72 28.83
KRH61335 Soybean plasma membrane 29.58 24.86
KRH52034 Soybean cytosol, plasma membrane, plastid 19.28 22.65
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.3Gene3D:3.30.200.20Gene3D:3.80.10.10UniProt:A0A0R0LAT1EMBL:ACUP02001259
EnsemblPlantsGene:GLYMA_02G244400GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538
InterPro:IPR000719InterPro:IPR032675EnsemblPlants:KRH72980ProteinID:KRH72980ProteinID:KRH72980.1InterPro:Kinase-like_dom_sf
InterPro:LRR_N_plant-typInterPro:LRR_dom_sfPFAM:PF00069PFAM:PF08263ScanProsite:PS00107PFscan:PS50011
PANTHER:PTHR27008PANTHER:PTHR27008:SF19InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSUPFAM:SSF52058SUPFAM:SSF56112
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0006ED8E02SEG:seg::
Description
hypothetical protein
Coordinates
chr2:+:43246859..43249655
Molecular Weight (calculated)
66418.5 Da
IEP (calculated)
7.570
GRAVY (calculated)
-0.138
Length
612 amino acids
Sequence
(BLAST)
001: MKSARVKEAI LLVFMFTILT IAGSDLASDR AGLLLLRSAV GGRTLLWNAT QTSPCSWTGV VCASGRVIML RLPAMGLSGS LPSGLGNLTE LQTLSLRFNA
101: LTGQIPDDFA NLKGSPLRFG VRVAESREPH SFGHSYLERN NFTGSIPDLD APPLDQFNVS FNSLTGSIPN RFSRLDRTAF LGNSLLCGKP LQLCPGTEEK
201: KGKLSGGAIA GIVIGSVVGV LLILLLLFFL CRKNNRKNEN ETLPPEKRVV EGEVVSRESG GNSGSAVAGS VEKSEIRSSS GGGAGDNKSL VFFGNVSRVF
301: SLDELLRASA EVLGKGTFGT TYKATMEMGA SVAVKRLKDV TATEKEFREK IEQVGKMVHH NLVSLRGYYF SRDEKLVVYD YMPMGSLSAL LHANGGVGRT
401: PLNWETRSAI ALGAARGIAY IHSHGPTSSH GNIKSSNILL TKTFEARVSD FGLAYLALPT STPNRVSGYR APEVTDARKI SQKADVYSFG IMLLELLTGK
501: APTHSSLTEE GVDLPRWVQS VVQDEWNTEV FDMELLRYQN VEEEMVKLLQ LALECTAQYP DKRPSMDVVA SKIEEICHPS LEKEEGKNHD FKDADNGFSQ
601: QYYSVDSGVS QA
Best Arabidopsis Sequence Match ( AT3G02880.1 )
(BLAST)
001: MKYKRKLSLS VVFLFVFYLA AVTSDLESDR RALLAVRNSV RGRPLLWNMS ASSPCNWHGV HCDAGRVTAL RLPGSGLFGS LPIGGIGNLT QLKTLSLRFN
101: SLSGPIPSDF SNLVLLRYLY LQGNAFSGEI PSLLFTLPSI IRINLGENKF SGRIPDNVNS ATRLVTLYLE RNQLSGPIPE ITLPLQQFNV SSNQLNGSIP
201: SSLSSWPRTA FEGNTLCGKP LDTCEAESPN GGDAGGPNTP PEKKDSDKLS AGAIVGIVIG CVVGLLLLLL ILFCLCRKRK KEENVPSRNV EAPVAAATSS
301: AAIPKETVVV VPPAKATGSE SGAVNKDLTF FVKSFGEFDL DGLLKASAEV LGKGTVGSSY KASFEHGLVV AVKRLRDVVV PEKEFRERLH VLGSMSHANL
401: VTLIAYYFSR DEKLLVFEYM SKGSLSAILH GNKGNGRTPL NWETRAGIAL GAARAISYLH SRDGTTSHGN IKSSNILLSD SYEAKVSDYG LAPIISSTSA
501: PNRIDGYRAP EITDARKISQ KADVYSFGVL ILELLTGKSP THQQLNEEGV DLPRWVQSVT EQQTPSDVLD PELTRYQPEG NENIIRLLKI GMSCTAQFPD
601: SRPSMAEVTR LIEEVSHSSG SPNPVSD
Arabidopsis Description
Probable inactive receptor kinase At3g02880 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.