Factsheet for Solyc11g011020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 10
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02880.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G02880.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G02880.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G02880.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G02880.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G02880.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G02880.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G02880.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G02880.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G02880.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040459	Potato	plasma membrane	98.13	97.37
VIT_14s0006g01080.t01	Wine grape	plasma membrane	63.24	63.54
Os03t0712400-02	Rice	plasma membrane	21.81	62.22
Solyc06g068910.2.1	Tomato	plasma membrane	58.1	58.83
KRH17350	Soybean	extracellular	57.01	58.65
KRH72980	Soybean	extracellular	54.83	57.52
Solyc03g118510.2.1	Tomato	nucleus	58.72	57.03
GSMUA_Achr2P21610_001	Banana	plasma membrane	53.27	56.53
GSMUA_Achr10P...	Banana	plasma membrane	50.47	56.25
Zm00001d048053_P001	Maize	plasma membrane	58.57	56.2
GSMUA_Achr3P07440_001	Banana	plasma membrane	45.17	55.98
GSMUA_Achr8P23000_001	Banana	plasma membrane	47.98	55.8
Zm00001d048054_P002	Maize	mitochondrion, plasma membrane	58.26	55.65
GSMUA_Achr6P05910_001	Banana	extracellular, plasma membrane, vacuole	48.75	55.59
Bra021408.1-P	Field mustard	plasma membrane	52.49	55.34
GSMUA_Achr3P02160_001	Banana	plasma membrane	41.43	55.3
EER95247	Sorghum	plasma membrane	57.94	55.19
Os03t0223000-02	Rice	plasma membrane	57.94	55.11
Bra023574.1-P	Field mustard	plasma membrane	52.18	54.65
CDX85498	Canola	plasma membrane	52.18	54.65
CDY38103	Canola	plasma membrane	52.02	54.49
TraesCS4D01G241100.1	Wheat	plasma membrane	57.01	54.38
AT3G02880.1	Thale cress	plasma membrane	52.96	54.23
CDY49655	Canola	plasma membrane	51.87	53.97
Bra008611.1-P	Field mustard	plasma membrane	51.87	53.97
CDX69441	Canola	plasma membrane	51.71	53.72
GSMUA_Achr9P15690_001	Banana	plasma membrane	46.73	53.57
CDY51524	Canola	plasma membrane	51.71	53.55
CDY28719	Canola	plasma membrane	50.16	53.31
Bra040609.1-P	Field mustard	plasma membrane	51.71	53.29
AT5G16590.1	Thale cress	plasma membrane	51.87	53.28
TraesCS4A01G064200.1	Wheat	plasma membrane	56.23	52.93
GSMUA_Achr7P11160_001	Banana	plasma membrane	43.77	52.62
TraesCS4B01G241500.1	Wheat	plasma membrane	50.78	51.75
TraesCS4D01G046900.1	Wheat	plasma membrane	52.34	50.07
TraesCS4B01G047100.1	Wheat	plasma membrane	52.49	49.93
HORVU4Hr1G007550.1	Barley	plasma membrane	51.71	49.7
Solyc01g067020.2.1	Tomato	plasma membrane	46.57	49.42
TraesCS4A01G267300.1	Wheat	plasma membrane	51.4	49.03
EER90996	Sorghum	plasma membrane	52.34	48.28
Solyc03g111670.2.1	Tomato	extracellular	49.38	48.1
Zm00001d033745_P001	Maize	plasma membrane	51.71	47.84
Solyc06g082610.2.1	Tomato	plasma membrane	45.95	47.2
Os04t0463000-01	Rice	plasma membrane	48.29	46.34
TraesCS2B01G344900.1	Wheat	plasma membrane	47.66	45.88
HORVU4Hr1G066900.1	Barley	plasma membrane	38.16	45.71
Solyc09g030450.2.1	Tomato	plasma membrane	45.02	45.66
TraesCS2D01G325900.1	Wheat	plasma membrane	47.35	45.44
Zm00001d013430_P001	Maize	mitochondrion	51.09	45.3
TraesCS2A01G337000.1	Wheat	plasma membrane	47.2	45.29
KXG26481	Sorghum	plasma membrane	47.35	45.24
TraesCS5D01G210800.1	Wheat	plasma membrane	45.33	44.91
Solyc03g095490.2.1	Tomato	plastid	44.24	44.72
HORVU0Hr1G012920.2	Barley	cytosol	35.51	44.71
TraesCS5B01G202900.1	Wheat	plasma membrane	45.02	44.26
TraesCS5A01G205500.1	Wheat	plasma membrane	44.86	44.24
Zm00001d003399_P001	Maize	mitochondrion, plasma membrane	45.95	43.57
Os09t0400500-01	Rice	plasma membrane	43.77	43.36
HORVU7Hr1G043470.2	Barley	plasma membrane	43.15	43.28
TraesCS7A01G214300.1	Wheat	plasma membrane	43.15	43.21
TraesCS7D01G216400.1	Wheat	plasma membrane	43.15	43.21
Zm00001d020403_P001	Maize	plasma membrane	43.15	43.21
KXG35590	Sorghum	plasma membrane	43.61	42.88
Solyc08g081940.2.1	Tomato	plasma membrane	42.83	42.83
HORVU2Hr1G080770.4	Barley	mitochondrion, plasma membrane, plastid	40.97	42.83
TraesCS7B01G121600.1	Wheat	plasma membrane	42.68	42.75
Solyc06g048560.1.1	Tomato	plasma membrane	39.25	42.5
EES15012	Sorghum	plasma membrane	42.83	41.98
Solyc05g009100.2.1	Tomato	plasma membrane	42.68	41.02
Zm00001d032244_P001	Maize	plasma membrane	41.59	39.79
Solyc09g008860.2.1	Tomato	plasma membrane	41.59	39.56
Os08t0427600-00	Rice	golgi, plasma membrane	27.26	39.06
Zm00001d050355_P001	Maize	plasma membrane	41.59	38.42
Solyc11g069960.1.1	Tomato	plasma membrane	35.36	35.75
Solyc04g008650.2.1	Tomato	plasma membrane	34.58	33.28
Solyc04g078590.2.1	Tomato	plasma membrane	32.87	31.59
Solyc02g093100.2.1	Tomato	plasma membrane	31.46	30.33

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	UniProt:K4D5Q9	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00069	PFAM:PF08263	PFAM:PF13855	ScanProsite:PS00107	PFscan:PS50011
PANTHER:PTHR27008	PANTHER:PTHR27008:SF19	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00369	SUPFAM:SSF52058
SUPFAM:SSF56112	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g011020.1	EnsemblPlants:Solyc11g011020.1.1	TMHMM:TMhelix	UniParc:UPI0002769912
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:4060635..4063522

Molecular Weight (calculated)

69145.0 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.036

Length

642 amino acids

Sequence
(BLAST)

001: MSSKVLFLFT IFVSIFSLFL PTNSDIVSDR ATLLSIRSAL RGRSLLWNIT SPTCSWPGVI CSPDKSSVLE LHLPGMGLLG QIPPGLFSNL TKLNFLSLRY
101: NALSGVIPAD LFTSLHDLRN LYLQNNLFSG PIPDSIFSLT NLVRLNLAHN NFSGSIPESF NNLTSLGTLY LQGNGFSGQI PDLNLPGLVQ FNVSNNQLNG
201: SIPDKLSGQP KDAFLGTSLC GKPLDSCDGS SSSGEGKKKK LSGGAIAGIV IGCVVGLLLL LCLLFFCCRK RGKAETRSAD VGAVSKQVEV EIPEERGVEG
301: NGGKDGFLGS AIAAIGVGGG NKDKGKAEAA VNDGKSLVFF GKMAKNFNLD DLLKASAEVL GKGTFGTAYK AALESGITLV VKRLRDVTVP EKEFREKIED
401: VGKMNHENLV PLRAYYYSRD EKLLVYDYIS MGSLSALLHG NKGAGRTPLN WETRAGIALG AAHGIAYLHA QGPSVSHGNI KSSNILLTKS YEARVSDFGL
501: AQLVGPSSTP NRVAGYRAPE VTDPRKVSQK ADVYSFGVLL LELLTGKAPT HSVMNEEGVD LPRWVQSVVR EEWTAEVFDL ELLRYQNVEE DMVQLLQVAV
601: DCTAQYPDRR PSMAEVTSRV EELCRMDSGG DIIDNDAEVQ TA

Best Arabidopsis Sequence Match ( AT1G48480.1 )
(BLAST)

001: MRVFFFPNSS MAILSVFLSL LLLSLPLPST QDLNADRTAL LSLRSAVGGR TFRWNIKQTS PCNWAGVKCE SNRVTALRLP GVALSGDIPE GIFGNLTQLR
101: TLSLRLNALS GSLPKDLSTS SNLRHLYLQG NRFSGEIPEV LFSLSHLVRL NLASNSFTGE ISSGFTNLTK LKTLFLENNQ LSGSIPDLDL PLVQFNVSNN
201: SLNGSIPKNL QRFESDSFLQ TSLCGKPLKL CPDEETVPSQ PTSGGNRTPP SVEGSEEKKK KNKLSGGAIA GIVIGCVVGF ALIVLILMVL CRKKSNKRSR
301: AVDISTIKQQ EPEIPGDKEA VDNGNVYSVS AAAAAAMTGN GKASEGNGPA TKKLVFFGNA TKVFDLEDLL RASAEVLGKG TFGTAYKAVL DAVTVVAVKR
401: LKDVMMADKE FKEKIELVGA MDHENLVPLR AYYFSRDEKL LVYDFMPMGS LSALLHGNRG AGRSPLNWDV RSRIAIGAAR GLDYLHSQGT STSHGNIKSS
501: NILLTKSHDA KVSDFGLAQL VGSSATNPNR ATGYRAPEVT DPKRVSQKGD VYSFGVVLLE LITGKAPSNS VMNEEGVDLP RWVKSVARDE WRREVFDSEL
601: LSLATDEEEM MAEMVQLGLE CTSQHPDQRP EMSEVVRKME NLRPYSGSDQ VNEAD

Arabidopsis Description

RKL1Probable inactive receptor kinase At1g48480 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP77]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.