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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 8
  • golgi 4
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g079880.2.1
Solyc02g083560.2.1
Solyc03g033400.2.1
Solyc03g095610.2.1
Solyc03g118630.2.1
Solyc06g054370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G48480.1 Solyc03g118630.2.1 AT3G17950.1 15618630
AT1G48480.1 Solyc03g095610.2.1 AT5G05190.1 15618630
AT3G17840.1 Solyc03g118630.2.1 AT3G17950.1 15618630
AT3G17840.1 Solyc02g083560.2.1 AT3G51310.1 15618630
AT3G17840.1 Solyc03g033400.2.1 AT3G51310.1 15618630
AT3G17840.1 Solyc03g095610.2.1 AT5G05190.1 15618630
AT3G17840.1 Solyc01g079880.2.1 AT5G19140.1 15618630
AT3G17840.1 Solyc06g054370.1.1 AT5G19140.1 15618630
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074103 Potato plasma membrane 94.01 91.98
Solyc03g118510.2.1 Tomato nucleus 69.87 67.02
KRH41871 Soybean endoplasmic reticulum 63.41 61.94
KRH60559 Soybean endoplasmic reticulum 63.72 61.59
VIT_17s0000g02010.t01 Wine grape plasma membrane 64.98 61.31
Os03t0712400-02 Rice plasma membrane 21.45 60.44
CDY61284 Canola plasma membrane 58.68 58.86
Bra021277.1-P Field mustard plasma membrane 58.2 58.39
CDY67567 Canola plasma membrane 53.63 58.32
KRH48661 Soybean nucleus 62.78 58.19
Solyc11g011020.1.1 Tomato nucleus 58.83 58.1
CDX92167 Canola plasma membrane 57.1 58.01
AT3G17840.1 Thale cress plasma membrane 58.68 57.5
CDX95816 Canola plasma membrane 53.47 57.46
AT1G48480.1 Thale cress plasma membrane 59.31 57.4
Bra022250.1-P Field mustard plasma membrane 56.94 57.21
Bra014140.1-P Field mustard plasma membrane 57.57 57.21
CDY41827 Canola plasma membrane 57.73 56.57
CDX77309 Canola plasma membrane 57.57 56.5
GSMUA_Achr2P21610_001 Banana plasma membrane 53.47 56.03
KRH39040 Soybean plasma membrane 57.1 55.35
GSMUA_Achr3P07440_001 Banana plasma membrane 44.95 55.02
GSMUA_Achr10P... Banana plasma membrane 49.21 54.17
GSMUA_Achr8P23000_001 Banana plasma membrane 47.0 53.99
EER95247 Sorghum plasma membrane 56.62 53.26
GSMUA_Achr3P02160_001 Banana plasma membrane 40.38 53.22
Zm00001d048053_P001 Maize plasma membrane 56.15 53.21
Os03t0223000-02 Rice plasma membrane 56.62 53.19
GSMUA_Achr6P05910_001 Banana extracellular, plasma membrane, vacuole 47.16 53.11
Zm00001d048054_P002 Maize mitochondrion, plasma membrane 55.84 52.68
GSMUA_Achr9P15690_001 Banana plasma membrane 46.21 52.32
TraesCS4D01G241100.1 Wheat plasma membrane 55.36 52.15
HORVU4Hr1G007550.1 Barley plasma membrane 54.1 51.35
TraesCS4A01G064200.1 Wheat plasma membrane 55.2 51.32
GSMUA_Achr7P11160_001 Banana plasma membrane 43.06 51.12
TraesCS4D01G046900.1 Wheat plasma membrane 53.94 50.97
TraesCS4B01G241500.1 Wheat plasma membrane 50.63 50.95
TraesCS4B01G047100.1 Wheat plasma membrane 54.1 50.81
TraesCS4A01G267300.1 Wheat plasma membrane 53.63 50.52
Solyc01g067020.2.1 Tomato plasma membrane 47.63 49.92
Zm00001d033745_P001 Maize plasma membrane 54.26 49.57
EER90996 Sorghum plasma membrane 54.26 49.43
Zm00001d013430_P001 Maize mitochondrion 53.47 46.82
TraesCS2B01G344900.1 Wheat plasma membrane 48.27 45.88
Os04t0463000-01 Rice plasma membrane 48.27 45.74
TraesCS2D01G325900.1 Wheat plasma membrane 48.27 45.74
Solyc03g111670.2.1 Tomato extracellular 47.48 45.68
TraesCS2A01G337000.1 Wheat plasma membrane 48.11 45.59
Solyc06g082610.2.1 Tomato plasma membrane 44.8 45.44
Solyc09g030450.2.1 Tomato plasma membrane 45.27 45.34
KXG26481 Sorghum plasma membrane 47.79 45.09
HORVU4Hr1G066900.1 Barley plasma membrane 37.85 44.78
Zm00001d003399_P001 Maize mitochondrion, plasma membrane 47.32 44.31
Solyc03g095490.2.1 Tomato plastid 43.85 43.78
HORVU7Hr1G043470.2 Barley plasma membrane 44.16 43.75
Zm00001d020403_P001 Maize plasma membrane 44.16 43.68
TraesCS5D01G210800.1 Wheat plasma membrane 44.32 43.36
TraesCS7D01G216400.1 Wheat plasma membrane 43.69 43.21
TraesCS5B01G202900.1 Wheat plasma membrane 44.48 43.19
TraesCS5A01G205500.1 Wheat plasma membrane 44.16 43.01
TraesCS7B01G121600.1 Wheat plasma membrane 43.38 42.9
TraesCS7A01G214300.1 Wheat plasma membrane 43.22 42.75
HORVU2Hr1G080770.4 Barley mitochondrion, plasma membrane, plastid 41.01 42.35
Os09t0400500-01 Rice plasma membrane 43.22 42.28
KXG35590 Sorghum plasma membrane 43.53 42.27
HORVU0Hr1G012920.2 Barley cytosol 33.75 41.96
Solyc05g009100.2.1 Tomato plasma membrane 43.85 41.62
Solyc06g048560.1.1 Tomato plasma membrane 38.49 41.15
EES15012 Sorghum plasma membrane 42.11 40.76
Solyc08g081940.2.1 Tomato plasma membrane 40.85 40.34
Zm00001d032244_P001 Maize plasma membrane 42.59 40.24
Os08t0427600-00 Rice golgi, plasma membrane 28.08 39.73
Solyc09g008860.2.1 Tomato plasma membrane 41.96 39.41
Zm00001d050355_P001 Maize plasma membrane 42.43 38.7
Solyc11g069960.1.1 Tomato plasma membrane 34.86 34.8
Solyc04g008650.2.1 Tomato plasma membrane 35.17 33.43
Solyc04g078590.2.1 Tomato plasma membrane 34.54 32.78
Solyc02g093100.2.1 Tomato plasma membrane 32.33 30.78
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.3Gene3D:3.30.200.20Gene3D:3.80.10.10GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538InterPro:IPR000719InterPro:IPR001611
InterPro:IPR032675UniProt:K4C864InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rpt
PFAM:PF00069PFAM:PF08263PFAM:PF13855PFscan:PS50011PANTHER:PTHR27008PANTHER:PTHR27008:SF19
InterPro:Prot_kinase_domSUPFAM:SSF52058SUPFAM:SSF56112SignalP:SignalP-noTMEnsemblPlantsGene:Solyc06g068910.2EnsemblPlants:Solyc06g068910.2.1
TMHMM:TMhelixUniParc:UPI0002766771SEG:seg:::
Description
No Description!
Coordinates
chr6:+:42721771..42725235
Molecular Weight (calculated)
69232.4 Da
IEP (calculated)
8.056
GRAVY (calculated)
-0.063
Length
634 amino acids
Sequence
(BLAST)
001: MVLLIIFIIH ALMFVSASSD LGSDRAALLA FRSAVGGRTF LWNTTITSPC NWAGVQCENN RVTVLRLPAS ALSGTLPVNT ISNLTRLRTL SLRLNRLSGP
101: LPSDLSKCVE LRNIYLQGNF FTGEISSSFS GLHSLVRLNL ADNNFSGEIP SGFNSLTRLR TFLLEKNQFS GFMPELKFFP NLEQFNVSFN RLNGSIPKSL
201: EVMPVSSFTG NSLCGKPINV CPGSKTQPAI ATDGIDIGNS NNKKKKLSGG AISGIVIGSI AGFFILLLIL FVLGRMKTGD KTRALDVETI KPPETEVPGE
301: KPIEKPENEG VNNGNSVATA EAAVVLNSGE ENWGGTGAKK KLVFFGDYYK AFELEDLLRA SAEVLGKGTL GTAYKAVLEI GTIVAVKRLK DVSISESECK
401: EKIETVGAMN HENLVHLRAY YFSREEKLLV FDYMPMGSLS ALLHGSKGAG RTPLNWEIRS SIALGIARGI EYLHSQGPDV SHGNIKSSNV LLTKSYEARV
501: SDFGLANLVG PPSSPTRVVG YRAPEVTDPR KVSQKADVYS FGVLLLELLT GKAPSHALLN EEGVDLPRWV QSVVREEWPS EVFDIELLRY QTAEEQMVQL
601: LQLAMNCTVQ YPNNRPSMAE ISKQIEELQR PTSH
Best Arabidopsis Sequence Match ( AT1G48480.1 )
(BLAST)
001: MRVFFFPNSS MAILSVFLSL LLLSLPLPST QDLNADRTAL LSLRSAVGGR TFRWNIKQTS PCNWAGVKCE SNRVTALRLP GVALSGDIPE GIFGNLTQLR
101: TLSLRLNALS GSLPKDLSTS SNLRHLYLQG NRFSGEIPEV LFSLSHLVRL NLASNSFTGE ISSGFTNLTK LKTLFLENNQ LSGSIPDLDL PLVQFNVSNN
201: SLNGSIPKNL QRFESDSFLQ TSLCGKPLKL CPDEETVPSQ PTSGGNRTPP SVEGSEEKKK KNKLSGGAIA GIVIGCVVGF ALIVLILMVL CRKKSNKRSR
301: AVDISTIKQQ EPEIPGDKEA VDNGNVYSVS AAAAAAMTGN GKASEGNGPA TKKLVFFGNA TKVFDLEDLL RASAEVLGKG TFGTAYKAVL DAVTVVAVKR
401: LKDVMMADKE FKEKIELVGA MDHENLVPLR AYYFSRDEKL LVYDFMPMGS LSALLHGNRG AGRSPLNWDV RSRIAIGAAR GLDYLHSQGT STSHGNIKSS
501: NILLTKSHDA KVSDFGLAQL VGSSATNPNR ATGYRAPEVT DPKRVSQKGD VYSFGVVLLE LITGKAPSNS VMNEEGVDLP RWVKSVARDE WRREVFDSEL
601: LSLATDEEEM MAEMVQLGLE CTSQHPDQRP EMSEVVRKME NLRPYSGSDQ VNEAD
Arabidopsis Description
RKL1Probable inactive receptor kinase At1g48480 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP77]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.