Factsheet for Solyc03g033400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118510.2.1
Solyc04g050240.2.1
Solyc06g068910.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	Solyc04g050240.2.1	AT5G53530.1	17889650
AT3G51310.1	Solyc03g118510.2.1	AT3G17840.1	15618630
AT3G51310.1	Solyc06g068910.2.1	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058024	Potato	cytosol	98.35	98.35
Solyc02g083560.2.1	Tomato	cytosol	90.13	90.13
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	81.9	81.49
KRH76626	Soybean	endoplasmic reticulum	81.52	81.11
TraesCS5D01G455000.1	Wheat	cytosol	79.11	78.81
TraesCS5A01G448400.1	Wheat	golgi	79.11	78.81
EER93269	Sorghum	cytosol	79.87	78.58
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	82.91	78.54
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	69.75	78.49
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	77.85	77.75
Zm00001d013059_P003	Maize	cytosol	79.49	76.21
CDY24377	Canola	cytosol	75.06	75.25
Bra002092.1-P	Field mustard	cytosol	75.06	75.25
CDY20826	Canola	cytosol	74.81	75.0
AT2G17790.1	Thale cress	cytosol	74.56	74.84
Os03t0801600-01	Rice	cytosol	80.0	73.4
TraesCS5B01G453000.1	Wheat	cytosol	78.99	70.67
AT3G51310.1	Thale cress	cytosol	69.49	69.49
CDX73731	Canola	cytosol	69.11	69.11
CDX77995	Canola	cytosol	68.99	68.99
Bra036818.1-P	Field mustard	cytosol	69.24	68.98
CDY59615	Canola	cytosol	68.61	68.0
KRH15953	Soybean	cytosol	5.44	60.56
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	10.13	45.2

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	UniProt:K4BFL2	PFAM:PF03635
PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc03g033400.2	EnsemblPlants:Solyc03g033400.2.1
UniParc:UPI00027679C8	InterPro:Vps35	SEG:seg	:	:	:

Description

Vacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:K4BFL2]

Coordinates

chr3:+:4966199..4975913

Molecular Weight (calculated)

89373.1 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.195

Length

790 amino acids

Sequence
(BLAST)

001: MTPNGVEDED KFLASGVAGI QQNAFHMHRA LDSNNLKDAL KYSAQMLSEL RTSRLSPHKY YELYMRAFDE LRKLEMFFKE ETKRGCSIVE LYELVQHAGN
101: ILPRLYLLCT VGSVYIKSKE APAKDILKDL VEMCRGIQHP LRGLFLRSYL SQVSKDKLPD IGSEYEGDAD TVVDAVEFVL QNFTEMNKLW VRMQHQGPAL
201: EKMKREKERS ELRDLVGKNL HVLSQIEGID LEMYKETVLP RILEQVVNCK DEIAQGYLMD CIIQVFPDEY HLQTLETLLG ACPQLQPSVD IKMVLARLME
301: RLSNYAALST DVLPEFFQVE AFAKLNSAIG KVIEAQENMP IAGVVTLYSS LLTFTLHVHP DRLDYVDQIL GACVKKLSGK GKLKDSIATK QIVALLSAPL
401: EKYKDIDTAL KLSNYPHVME HLDDATSKVM ANVLVQTILK NKTCISTDEK VEALFELMKG LIRDLDENLH DEFDEEDFKE EQNSVSRLIQ MLHNDDPEEM
501: LKIICTVKKH IVTGGPKRLP FTVPPLIFNS LKLVRRLQNQ DENAPEEETS AIPKKIFQIL NQIIEALSSV PVPELALRLY LECAEAANDS DLEPVAYEFF
601: TQAYILYEEE ISDSKAQVTA IQLIIGTLQR MHIFGVENRD TLTHKATGYS AKLLKKPDQC KAVYSCAHLF WVDDQDSIKD GERVLLCLKR ALRIANAAQQ
701: MSNATRGSSG SVLLFIEILN KYLYFYEKGV TQITVASIQS LLELITTEMQ SENKTADPAA DALLASTLRY IQFQKDKGGA VGEKYDSIKS

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.