Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G448400.1 | Wheat | golgi | 89.69 | 99.87 |
| HORVU5Hr1G107250.1 | Barley | cytosol | 89.69 | 99.87 |
| TraesCS5D01G455000.1 | Wheat | cytosol | 89.58 | 99.75 |
| EER93269 | Sorghum | cytosol | 86.41 | 95.02 |
| Zm00001d034492_P006 | Maize | endoplasmic reticulum, extracellular | 73.61 | 92.59 |
| Zm00001d013059_P003 | Maize | cytosol | 85.16 | 91.26 |
| Os03t0801600-01 | Rice | cytosol | 84.94 | 87.11 |
| GSMUA_Achr9P11120_001 | Banana | cytosol | 77.24 | 86.44 |
| VIT_18s0001g14680.t01 | Wine grape | cytosol | 73.84 | 82.53 |
| KRH76626 | Soybean | endoplasmic reticulum | 72.59 | 80.73 |
| KRH28827 | Soybean | cytosol, endoplasmic reticulum, nucleus | 72.37 | 80.48 |
| GSMUA_Achr4P17490_001 | Banana | cytosol | 72.03 | 80.4 |
| Solyc12g089340.1.1 | Tomato | cytosol, nucleus, plastid | 71.91 | 80.28 |
| PGSC0003DMT400075420 | Potato | cytosol | 71.46 | 79.77 |
| PGSC0003DMT400058024 | Potato | cytosol | 70.78 | 79.11 |
| Solyc03g033400.2.1 | Tomato | cytosol, nucleus | 70.67 | 78.99 |
| KRH05971 | Soybean | cytosol | 71.01 | 78.57 |
| KRH17452 | Soybean | endoplasmic reticulum | 70.78 | 78.42 |
| Solyc02g083560.2.1 | Tomato | cytosol | 69.99 | 78.23 |
| VIT_04s0023g03870.t01 | Wine grape | cytosol, mitochondrion | 73.73 | 78.06 |
| PGSC0003DMT400009386 | Potato | cytosol | 69.76 | 77.97 |
| CDX87655 | Canola | cytosol | 68.52 | 76.39 |
| AT1G75850.1 | Thale cress | cytosol | 67.61 | 75.57 |
| CDX73208 | Canola | cytosol | 60.82 | 75.21 |
| Bra015806.1-P | Field mustard | cytosol | 68.4 | 74.85 |
| CDY13527 | Canola | mitochondrion | 55.83 | 74.81 |
| Bra002092.1-P | Field mustard | cytosol | 65.69 | 73.6 |
| CDY24377 | Canola | cytosol | 65.69 | 73.6 |
| CDY20826 | Canola | cytosol | 65.46 | 73.35 |
| AT2G17790.1 | Thale cress | cytosol | 65.23 | 73.19 |
| CDX77995 | Canola | cytosol | 61.83 | 69.11 |
| CDX73731 | Canola | cytosol | 61.83 | 69.11 |
| AT3G51310.1 | Thale cress | cytosol | 61.49 | 68.73 |
| Bra036818.1-P | Field mustard | cytosol | 61.72 | 68.73 |
| CDY59615 | Canola | cytosol | 61.27 | 67.88 |
| KRH15953 | Soybean | cytosol | 5.44 | 67.61 |
| KRH37553 | Soybean | cytosol | 8.27 | 62.93 |
| CDY13526 | Canola | cytosol | 8.27 | 60.83 |
| CDX73207 | Canola | cytosol | 6.12 | 59.34 |
| CDY39067 | Canola | endoplasmic reticulum, golgi | 18.12 | 54.42 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G453000.1 | EnsemblPlantsGene:TraesCS5B01G453000 | Gene3D:1.25.40.660 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0030906 |
| GO:GO:0042147 | InterPro:ARM-type_fold | InterPro:Vps35 | PANTHER:PTHR11099 | PANTHER:PTHR11099:SF1 | PFAM:PF03635 |
| PIRSF:PIRSF009375 | SEG:seg | SUPFAM:SSF48371 | MapMan:22.5.5.3.1 | : | : |
Description
No Description!
Coordinates
chr5B:+:625956335..625964615
Molecular Weight (calculated)
99599.7 Da
IEP (calculated)
5.768
GRAVY (calculated)
-0.335
Length
883 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSAPGRPA GQLYASVPIE TIRDPGKRHQ SKHRDKLNIN KHAKNTDTRT QPNPKGQSHA RRDPQPPEPE PPPPTRSAAP PEAANTAAAR MLPDGGGDDE
101: ERWLAEGIAG VQQNAFYMHR ALDSNNLKDA LKYSAQMLSE LRTSRLSPHK YYELYMRAFD EMRKLEMFFR EETRRGSCSV VDLYELVQHA GNVLPRLYLL
201: CTVGSVYIKS KEAPAKDVLK DLVEMCRGIQ HPLRGLFLRS YLSQISRDKL PDIGSEYEGD ADSINDAVEF VLQNFIEMNK LWVRMQHQGP VREKDKRGKE
301: RNELRDLVGK NLHVLSQIEG VDLEMYKENV LPRISEQVVN CKDDLAQFYL MDCIIQVFPD EYHLQTLETL LSAFPQLQPS VDIKTVLSQL MDRLSNYAAT
401: SPEVLPEFLQ VEAFAKFSNA IGKVIEAQVD MPVVGAVTLY VSLLTFTLRV HPDRLDYVDQ VLGACVKKLS GKEKLEDSRA TKQIVALLSA PLEKYSNIVT
501: ALELSNYPRV MDYLDNATTK VMALVIIQSI MKNTTCISTS DKIEALFDLI KGLIKDMDGA QDDELDEEDF KEEQNSVARL IHMLHNDDHD EMLKILCTVQ
601: KHILQGGPKR LPFTVPSLVF SALKLVRRLQ GQDGDVTGEE VPATPKKIFQ ILHQTIEALQ CIPCPELSLR LYLQCAEAAN DCDLEPVAYE FFTQAFILYE
701: EEIADSKAQI TALHLIIGTL QRMNIFGVEN RDTLTHKTTG YSAKLLKKPD QCRAVYACSH LFWTDDQDGI MDGERVLLCL KRALRIANAA QQMANVSKGS
801: SGSVILFIEI LNKYLYFFEK GIPQITNTVI QDLIELIRTE KQNDSSASDP SAEAFFASTL RYIEFEKQKG GSIGEKYEQI KAS
101: ERWLAEGIAG VQQNAFYMHR ALDSNNLKDA LKYSAQMLSE LRTSRLSPHK YYELYMRAFD EMRKLEMFFR EETRRGSCSV VDLYELVQHA GNVLPRLYLL
201: CTVGSVYIKS KEAPAKDVLK DLVEMCRGIQ HPLRGLFLRS YLSQISRDKL PDIGSEYEGD ADSINDAVEF VLQNFIEMNK LWVRMQHQGP VREKDKRGKE
301: RNELRDLVGK NLHVLSQIEG VDLEMYKENV LPRISEQVVN CKDDLAQFYL MDCIIQVFPD EYHLQTLETL LSAFPQLQPS VDIKTVLSQL MDRLSNYAAT
401: SPEVLPEFLQ VEAFAKFSNA IGKVIEAQVD MPVVGAVTLY VSLLTFTLRV HPDRLDYVDQ VLGACVKKLS GKEKLEDSRA TKQIVALLSA PLEKYSNIVT
501: ALELSNYPRV MDYLDNATTK VMALVIIQSI MKNTTCISTS DKIEALFDLI KGLIKDMDGA QDDELDEEDF KEEQNSVARL IHMLHNDDHD EMLKILCTVQ
601: KHILQGGPKR LPFTVPSLVF SALKLVRRLQ GQDGDVTGEE VPATPKKIFQ ILHQTIEALQ CIPCPELSLR LYLQCAEAAN DCDLEPVAYE FFTQAFILYE
701: EEIADSKAQI TALHLIIGTL QRMNIFGVEN RDTLTHKTTG YSAKLLKKPD QCRAVYACSH LFWTDDQDGI MDGERVLLCL KRALRIANAA QQMANVSKGS
801: SGSVILFIEI LNKYLYFFEK GIPQITNTVI QDLIELIRTE KQNDSSASDP SAEAFFASTL RYIEFEKQKG GSIGEKYEQI KAS
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
Arabidopsis Description
VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.