Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002092.1-P | Field mustard | cytosol | 92.5 | 92.39 |
| CDY20826 | Canola | cytosol | 92.5 | 92.39 |
| CDY24377 | Canola | cytosol | 92.5 | 92.39 |
| KRH28827 | Soybean | cytosol, endoplasmic reticulum, nucleus | 77.89 | 77.2 |
| KRH76626 | Soybean | endoplasmic reticulum | 77.89 | 77.2 |
| PGSC0003DMT400009386 | Potato | cytosol | 76.37 | 76.08 |
| Solyc02g083560.2.1 | Tomato | cytosol | 76.24 | 75.95 |
| PGSC0003DMT400058024 | Potato | cytosol | 75.1 | 74.81 |
| Solyc03g033400.2.1 | Tomato | cytosol, nucleus | 74.84 | 74.56 |
| TraesCS5A01G448400.1 | Wheat | golgi | 73.32 | 72.76 |
| TraesCS5D01G455000.1 | Wheat | cytosol | 73.19 | 72.64 |
| VIT_04s0023g03870.t01 | Wine grape | cytosol, mitochondrion | 76.62 | 72.3 |
| EER93269 | Sorghum | cytosol | 73.32 | 71.86 |
| Zm00001d034492_P006 | Maize | endoplasmic reticulum, extracellular | 63.66 | 71.37 |
| AT3G51310.1 | Thale cress | cytosol | 70.39 | 70.13 |
| Zm00001d013059_P003 | Maize | cytosol | 73.06 | 69.78 |
| AT1G75850.1 | Thale cress | cytosol | 67.85 | 67.59 |
| Os03t0801600-01 | Rice | cytosol | 73.82 | 67.48 |
| TraesCS5B01G453000.1 | Wheat | cytosol | 73.19 | 65.23 |
| KRH15953 | Soybean | cytosol | 5.21 | 57.75 |
| HORVU7Hr1G081830.7 | Barley | cytosol, endoplasmic reticulum, plastid | 9.53 | 42.37 |
Protein Annotations
| Gene3D:1.25.40.660 | MapMan:22.5.5.3.1 | EntrezGene:816289 | ProteinID:AEC06688.1 | EMBL:AK229772 | ArrayExpress:AT2G17790 |
| EnsemblPlantsGene:AT2G17790 | RefSeq:AT2G17790 | TAIR:AT2G17790 | RefSeq:AT2G17790-TAIR-G | EnsemblPlants:AT2G17790.1 | TAIR:AT2G17790.1 |
| Unigene:At.40097 | EMBL:BT008553 | EMBL:BT008664 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005770 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008565 |
| GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0030904 | GO:GO:0030906 | GO:GO:0031902 |
| GO:GO:0042147 | RefSeq:NP_179370.2 | PFAM:PF03635 | PIRSF:PIRSF009375 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11099 |
| PANTHER:PTHR11099:SF1 | UniProt:Q7X659 | UniParc:UPI000019AB00 | Symbol:VPS35A | InterPro:Vps35 | SEG:seg |
Description
VPS35AVacuolar protein sorting-associated protein 35A [Source:UniProtKB/Swiss-Prot;Acc:Q7X659]
Coordinates
chr2:+:7733563..7739675
Molecular Weight (calculated)
89498.2 Da
IEP (calculated)
4.883
GRAVY (calculated)
-0.154
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MIADGSEDEE KWLAAGAAAF KQNAFYMQRA IDSNNLKDAL KYSAQMLSEL RTSKLSPHKY YDLYMRAFDE LRKLEIFFME ETRRGCSVIE LYELVQHAGN
101: ILPRLYLLCT AGSVYIKTKE APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL LNFTEMNKLW VRMQHQGPAR
201: EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME
301: RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL
401: EKYNDVVTAL KLTNYPLVVE YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE EQNSVALLIH MLYNDDPEEM
501: FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF
601: TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ
701: VANTARGSTG SVTLFIEILN KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE RYQAIKV
101: ILPRLYLLCT AGSVYIKTKE APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL LNFTEMNKLW VRMQHQGPAR
201: EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME
301: RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL
401: EKYNDVVTAL KLTNYPLVVE YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE EQNSVALLIH MLYNDDPEEM
501: FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF
601: TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ
701: VANTARGSTG SVTLFIEILN KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE RYQAIKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.