CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90996
EER95247
EES15012
EES16015
KXG26481
KXG35590
OQU83889

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	EES16015	AT5G53530.1	17889650
AT2G17790.1	OQU83889	AT5G53530.1	17889650
AT3G51310.1	EER90996	AT3G17840.1	15618630
AT3G51310.1	EER95247	AT3G17840.1	15618630
AT3G51310.1	EES15012	AT3G17840.1	15618630
AT3G51310.1	KXG26481	AT3G17840.1	15618630
AT3G51310.1	KXG35590	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	84.68	96.87
TraesCS5A01G448400.1	Wheat	golgi	94.52	95.71
HORVU5Hr1G107250.1	Barley	cytosol	94.52	95.71
Zm00001d013059_P003	Maize	cytosol	98.13	95.63
TraesCS5D01G455000.1	Wheat	cytosol	94.4	95.59
Os03t0801600-01	Rice	cytosol	94.52	88.15
GSMUA_Achr9P11120_001	Banana	cytosol	85.18	86.69
TraesCS5B01G453000.1	Wheat	cytosol	95.02	86.41
VIT_18s0001g14680.t01	Wine grape	cytosol	81.57	82.91
GSMUA_Achr4P17490_001	Banana	cytosol	80.95	82.17
KRH76626	Soybean	endoplasmic reticulum	80.82	81.74
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	80.45	81.67
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	80.57	81.49
PGSC0003DMT400075420	Potato	cytosol	80.07	81.29
PGSC0003DMT400058024	Potato	cytosol	78.95	80.25
Solyc03g033400.2.1	Tomato	cytosol, nucleus	78.58	79.87
KRH05971	Soybean	cytosol	79.33	79.82
KRH17452	Soybean	endoplasmic reticulum	78.95	79.55
Solyc02g083560.2.1	Tomato	cytosol	78.08	79.37
PGSC0003DMT400009386	Potato	cytosol	77.83	79.11
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	81.2	78.18
CDX87655	Canola	cytosol	76.59	77.65
AT1G75850.1	Thale cress	cytosol	75.84	77.09
CDY13527	Canola	mitochondrion	63.01	76.78
Bra015806.1-P	Field mustard	cytosol	76.46	76.08
CDX73208	Canola	cytosol	67.37	75.77
Bra002092.1-P	Field mustard	cytosol	72.6	73.98
CDY24377	Canola	cytosol	72.6	73.98
CDY20826	Canola	cytosol	72.35	73.73
AT2G17790.1	Thale cress	cytosol	71.86	73.32
CDX73731	Canola	cytosol	68.99	70.13
CDX77995	Canola	cytosol	68.74	69.87
AT3G51310.1	Thale cress	cytosol	68.49	69.62
Bra036818.1-P	Field mustard	cytosol	68.74	69.61
CDY59615	Canola	cytosol	68.24	68.76
KRH15953	Soybean	cytosol	5.85	66.2
CDX73207	Canola	cytosol	7.47	65.93
KRH37553	Soybean	cytosol	9.22	63.79
CDY13526	Canola	cytosol	8.97	60.0
CDY39067	Canola	endoplasmic reticulum, golgi	20.67	56.46

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	EntrezGene:8061151	InterPro:ARM-type_fold	UniProt:C5WX27	EnsemblPlants:EER93269
ProteinID:EER93269	ProteinID:EER93269.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005829
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099
PANTHER:PTHR11099:SF1	EnsemblPlantsGene:SORBI_3001G052700	SUPFAM:SSF48371	unigene:Sbi.11893	UniParc:UPI0001A82ADE	InterPro:Vps35
RefSeq:XP_002466271.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3883629..3894545

Molecular Weight (calculated)

90635.3 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.184

Length

803 amino acids

Sequence
(BLAST)

001: MAAASAAVRM LPDGGADDEE RWLAEGIAGV QQNAFYMHRA LDSNNLKDAL KYSAQMLSEL RTSRLSPHKY YELYMRAFDE MKKLEMFFRE ETRRGSCSVV
101: DLYELVQHAG NVLPRLYLLC TVGSVYIKSK EAPAKDVLKD LVEMCRGIQH PLRGLFLRSY LSQISRDKLP DIGSEYEGDA ESINDAVEFV LQNFIEMNKL
201: WVRMQHQGPV REKEKRGKER NELRDLVGKN LHVLSQIEGV DLDMYKETVL PRILEQVVNC KDDLAQFYLM DCIIQVFPDE YHLQTLETLL SAFPQLQPSV
301: DIKTVLSQLM DRLSNYAASS PEVLPEFLQV EAFAKFSSAI GKVIEAQPDM PVVGAVTLYV SLLTFTLRVH PDRLDYVDQV LGACVKKLSG KAKLEDSRAT
401: KQIVALLSAP LEKYSNIVTA LELSNYPRVM DYLDNATTKV MAVVIIQSIM KNTTCISTSD KIESLFDLIK GLIKDMDGAQ DDELDEEDFK EEQNSVARLI
501: HMLHNDDPEE MLKILCTVQK HILQGGPKRL TFTVPSLVFS ALKLVRRLQG QDGDVTGEDV PATPKKIFQI LHQTIEALSC VPSPELALRL YLQCAEAAND
601: CDLEPVAYEF FTQAFILYEE EIADSKAQIT AIHLIIGTLQ RMNIFGVENR DTLTHKTTGY SAKLLKKPDQ CRAVYACSHL FWTDDQDGIM DGERVLLCLK
701: RALRIANAAQ QMASATRGSS GSVTLFIEIL NKYLYFFEKG IPQITNTVIQ DLIELIRTEK QSDNSVADPS TEAFFSSTLR YIEFQKQKGG SIGEKYEQIK
801: TSS

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.