CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	EER93269	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023738_P001	Maize	extracellular, plasma membrane	99.67	99.67
OQU83889	Sorghum	cytosol	62.83	89.25
Os12t0500700-01	Rice	plasma membrane	89.47	88.89
GSMUA_Achr5P05770_001	Banana	cytosol	86.18	83.17
Solyc04g050240.2.1	Tomato	plastid	82.24	83.06
Bra003049.1-P	Field mustard	cytosol	79.61	80.13
AT5G53530.1	Thale cress	cytosol	78.95	79.47
AT4G27690.1	Thale cress	cytosol	78.29	78.55
GSMUA_Achr5P23810_001	Banana	golgi	82.89	78.5
CDY72159	Canola	cytosol	37.83	78.23
Bra026315.1-P	Field mustard	cytosol	77.63	77.89
VIT_06s0009g01880.t01	Wine grape	cytosol	82.57	75.6
CDY28831	Canola	cytosol	78.62	74.45
CDY55345	Canola	endoplasmic reticulum	78.62	73.99
CDY19034	Canola	cytosol, endoplasmic reticulum	75.99	73.8
Bra022659.1-P	Field mustard	cytosol	78.95	69.97
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	81.58	66.13
KRG89789	Soybean	plastid	36.84	64.37
CDY14373	Canola	cytosol, plastid	68.42	60.12
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	78.62	57.45

Protein Annotations

Gene3D:2.60.40.640	MapMan:22.5.5.3.3	EntrezGene:8064101	InterPro:Arrestin_C	UniProt:C5YNX3	EnsemblPlants:EES16015
ProteinID:EES16015	ProteinID:EES16015.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008565	GO:GO:0009987	GO:GO:0016020
GO:GO:0030904	GO:GO:0042147	InterPro:IPR014752	PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF13
EnsemblPlantsGene:SORBI_3008G103300	unigene:Sbi.1382	UniParc:UPI0001A88332	InterPro:Vps26-related	RefSeq:XP_002442177.1	:

Description

hypothetical protein

Coordinates

chr8:+:48975256..48982186

Molecular Weight (calculated)

35320.5 Da

IEP (calculated)

7.418

GRAVY (calculated)

-0.321

Length

304 amino acids

Sequence
(BLAST)

001: MNYIIGAFKP PCDISITFSD ARTRKQVSVK KDNGKTTMVP VFQSLETISG EVSIAPVPGK RIEHTGVKIE LLGQIELYFD RGNFYDFTSL VRELDIPGEI
101: YERKTFPFEF STVEMPYESY NGTNVRLRYI LKVTIGRNYV GNIVEYRDFC VRNYSPVPTI NNSIKMEVGI EDCLHIEFEY SKSKYHLNDV IIGKIYFLLV
201: RIKIKNMELE IRRRESTGSG SNTYVETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT YRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITMYRLLES
301: PPAS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.