Factsheet for VIT_06s0009g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18662	Soybean	cytosol	77.71	85.71
EES16015	Sorghum	cytosol	75.6	82.57
Zm00001d023738_P001	Maize	extracellular, plasma membrane	75.3	82.24
TraesCS4A01G164600.2	Wheat	cytosol	75.0	81.91
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	75.0	81.91
TraesCSU01G067300.1	Wheat	cytosol	71.08	81.66
HORVU4Hr1G031010.1	Barley	cytosol	74.7	81.58
Zm00001d007296_P001	Maize	cytosol, extracellular	74.7	81.58
OQU83889	Sorghum	cytosol	51.51	79.91
Os11t0629200-01	Rice	cytosol, plasma membrane	71.99	78.62
Os12t0500700-01	Rice	plasma membrane	71.39	77.45
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	78.92	69.87
Os03t0679100-01	Rice	cytosol	11.45	65.52

Protein Annotations

EntrezGene:100246120	wikigene:100246120	Gene3D:2.60.40.640	MapMan:22.5.5.3.3	InterPro:Arrestin_C	ProteinID:CBI24336
ProteinID:CBI24336.3	UniProt:D7T1F6	EMBL:FN595504	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008565	GO:GO:0009987
GO:GO:0016020	GO:GO:0030904	GO:GO:0042147	InterPro:IPR014752	InterPro:Ig_E-set	EntrezGene:LOC100246120
wikigene:LOC100246120	PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	SUPFAM:SSF81296	UniParc:UPI0001BE22CB
ArrayExpress:VIT_06s0009g01880	EnsemblPlantsGene:VIT_06s0009g01880	EnsemblPlants:VIT_06s0009g01880.t01	InterPro:Vps26-related	RefSeq:XP_002269444	RefSeq:XP_002269444.2

Description

No Description!

Coordinates

chr6:+:14014094..14035067

Molecular Weight (calculated)

38658.5 Da

IEP (calculated)

7.533

GRAVY (calculated)

-0.376

Length

332 amino acids

Sequence
(BLAST)

001: MNQSSQNPSC TLAHKGILPR TNFYTEFDRR IMNYLVGAFK PPCNISISFA DGRTRKQVPL KKENGQTVKV PLFQSQENIV GEVVIEPTQG KKVEHTGVKI
101: ELLGQIEMYF DRGNFYDFSS LVRELDVPGE LYETKTYPFE FSTVEMPYES YNGINVRLRY ILKVTVGRNF VSNIVEYQDF VVHNYTPLPS INNSIKMEVG
201: IEDCLHIEFE YSKSKYHLKD VIIGKIYFLL VRIKMKNMEL EIRRRESTGS GPNTYVETET LAKFEVMDGA PVRGESIPIR LFLSPYELTP TYRNINNKFS
301: VKYFLNLVLV DDEDRRYFKQ QEITVYRLLE TS

Best Arabidopsis Sequence Match ( AT4G27690.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFSD GKNRKQVPMK KENGQTALVP LFHSQDTISG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS

Arabidopsis Description

VPS26BVPS26B [Source:UniProtKB/TrEMBL;Acc:A0A178UZ41]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.