Factsheet for Zm00001d007296_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013059_P003
Zm00001d034492_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Zm00001d013059_P003	AT2G17790.1	17889650
AT5G53530.1	Zm00001d034492_P006	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G067300.1	Wheat	cytosol	89.14	93.77
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	93.09	93.09
TraesCS4A01G164600.2	Wheat	cytosol	93.09	93.09
HORVU4Hr1G031010.1	Barley	cytosol	92.43	92.43
Zm00001d023738_P001	Maize	extracellular, plasma membrane	91.45	91.45
OQU83889	Sorghum	cytosol	63.82	90.65
Os11t0629200-01	Rice	cytosol, plasma membrane	88.82	88.82
Solyc04g050240.2.1	Tomato	plastid	81.58	82.39
GSMUA_Achr5P05770_001	Banana	cytosol	83.55	80.63
Bra003049.1-P	Field mustard	cytosol	79.28	79.8
Os03t0679100-01	Rice	cytosol	15.13	79.31
AT5G53530.1	Thale cress	cytosol	78.62	79.14
CDY72159	Canola	cytosol	37.83	78.23
AT4G27690.1	Thale cress	cytosol	76.97	77.23
GSMUA_Achr5P23810_001	Banana	golgi	81.25	76.95
Bra026315.1-P	Field mustard	cytosol	76.32	76.57
VIT_06s0009g01880.t01	Wine grape	cytosol	81.58	74.7
CDY28831	Canola	cytosol	77.96	73.83
CDY55345	Canola	endoplasmic reticulum	77.3	72.76
CDY19034	Canola	cytosol, endoplasmic reticulum	74.67	72.52
Bra022659.1-P	Field mustard	cytosol	78.29	69.39
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	81.58	66.13
KRG89789	Soybean	plastid	36.18	63.22
CDY14373	Canola	cytosol, plastid	69.08	60.69
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	77.96	56.97

Protein Annotations

EntrezGene:100193449	Gene3D:2.60.40.640	MapMan:22.5.5.3.3	InterPro:Arrestin_C	UniProt:B4FF26	EMBL:BT035714
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR014752	ProteinID:ONM26477.1
PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF13	UniParc:UPI00017B6727	InterPro:Vps26-related	EnsemblPlantsGene:Zm00001d007296
EnsemblPlants:Zm00001d007296_P001	EnsemblPlants:Zm00001d007296_T001	:	:	:	:

Description

Vacuolar protein sorting-associated protein 26A

Coordinates

chr2:+:227084917..227088392

Molecular Weight (calculated)

35414.8 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.317

Length

304 amino acids

Sequence
(BLAST)

001: MNYIIGAFKP PCDIFVTFAD ERTRKQVQIK KDNGKTVMVP AFQTLETIAG EVSIAPVPGK RLEHTGVKIE LLGQIELYFD RGNFYDFTSI VRELDVPGEI
101: YERKTYPFEF STVEMPYESY NGTNVRLRYI LKVTIGRNYV GSIVESRDFC VRNYSLVPTI NNSIKMEVGI EDCLHIEFEY SKSKYHLKDV IIGKIYFLLV
201: RIKIKNMELE IRRRESTGSG PNTYVETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT HRNINNKFSV KYYLNLVIVD EEDRRYFKQH EITMYRLLET
301: PQSS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.