CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83889	Sorghum	cytosol	54.6	44.39
KRH18662	Soybean	cytosol	71.26	41.2
HORVU4Hr1G031010.1	Barley	cytosol	64.94	37.17
KRH56246	Soybean	endoplasmic reticulum	64.37	37.09
EES16015	Sorghum	cytosol	64.37	36.84
Os11t0629200-01	Rice	cytosol, plasma membrane	64.37	36.84
TraesCS4A01G164600.2	Wheat	cytosol	64.37	36.84
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	64.37	36.84
Zm00001d023738_P001	Maize	extracellular, plasma membrane	64.37	36.84
KRH62711	Soybean	endoplasmic reticulum	63.79	36.76
Os12t0500700-01	Rice	plasma membrane	63.79	36.27
Zm00001d007296_P001	Maize	cytosol, extracellular	63.22	36.18
TraesCSU01G067300.1	Wheat	cytosol	57.47	34.6
Os03t0679100-01	Rice	cytosol	1.72	5.17

Protein Annotations

Gene3D:2.60.40.640	MapMan:35.1	EMBL:ACUP02012275	InterPro:Arrestin_C	EnsemblPlantsGene:GLYMA_20G048500	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008565	GO:GO:0009987	GO:GO:0016020	GO:GO:0030904	GO:GO:0042147	InterPro:IPR014752
UniProt:K7N1L5	EnsemblPlants:KRG89789	ProteinID:KRG89789	ProteinID:KRG89789.1	PFAM:PF03643	UniParc:UPI00029600C4
InterPro:Vps26-related	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:9312006..9315801

Molecular Weight (calculated)

20552.6 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.513

Length

174 amino acids

Sequence
(BLAST)

001: MASPFETRNA TAIWWRFFKN SCRHTAVAPP FDNTAPCNDC TMVRNYSPAP PFNNSIKMEV GIEECLHREF EYGKSKYHLK DVIVGKIYFL LVRIKIKTME
101: LERPGQSSTP DEWCSRESIP VRLFLSPYEL TPTYRNINNK FSVKYFLNLV LVDEEDRRYF KQQEITVYRL SENS

Best Arabidopsis Sequence Match ( AT4G27690.2 )
(BLAST)

001: MKKENGQTAL VPLFHSQDTI SGKVCIEPYQ GKKVEHNGVK VELLGQIEMY FDRGNFYDFT SLVRELDVPG EIYERKTYPF EFPTVEMPYE TYNGVNVRLR
101: YVLKVTVTRG YAGSILEYQE LVVRNYAPLP DINNSIKMEV GIEDCLHIEF EYNKSKYHLK DVILGKIYFL LVRIKMKNMD LEIRRRESTG AGANTHVETE
201: TLAKFELMDG TPVRGESIPV RLFLAPYDLT PTHRNINNKF SVKYYLNLVL VDEEDRRYFK QQEITLYRLK EDASS

Arabidopsis Description

VPS26BVPS26B [Source:UniProtKB/TrEMBL;Acc:A0A178UZ41]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.