Factsheet for TraesCS4A01G164600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G448400.1
TraesCS5B01G453000.1
TraesCS5D01G455000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	TraesCS5A01G448400.1	AT2G17790.1	17889650
AT5G53530.1	TraesCS5B01G453000.1	AT2G17790.1	17889650
AT5G53530.1	TraesCS5D01G455000.1	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G067300.1	Wheat	cytosol	95.07	100.0
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	100.0	100.0
HORVU4Hr1G031010.1	Barley	cytosol	98.68	98.68
Zm00001d007296_P001	Maize	cytosol, extracellular	93.09	93.09
Os11t0629200-01	Rice	cytosol, plasma membrane	90.46	90.46
OQU83889	Sorghum	cytosol	63.16	89.72
Solyc04g050240.2.1	Tomato	plastid	83.22	84.05
Os03t0679100-01	Rice	cytosol	15.79	82.76
GSMUA_Achr5P05770_001	Banana	cytosol	83.55	80.63
CDY72159	Canola	cytosol	38.82	80.27
Bra003049.1-P	Field mustard	cytosol	79.61	80.13
AT5G53530.1	Thale cress	cytosol	78.95	79.47
AT4G27690.1	Thale cress	cytosol	77.63	77.89
GSMUA_Achr5P23810_001	Banana	golgi	81.58	77.26
Bra026315.1-P	Field mustard	cytosol	76.64	76.9
VIT_06s0009g01880.t01	Wine grape	cytosol	81.91	75.0
CDY28831	Canola	cytosol	78.62	74.45
CDY55345	Canola	endoplasmic reticulum	77.63	73.06
CDY19034	Canola	cytosol, endoplasmic reticulum	75.0	72.84
Bra022659.1-P	Field mustard	cytosol	78.95	69.97
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	80.92	65.6
KRG89789	Soybean	plastid	36.84	64.37
CDY14373	Canola	cytosol, plastid	69.74	61.27
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	78.62	57.45

Protein Annotations

EnsemblPlants:TraesCS4A01G164600.2	EnsemblPlantsGene:TraesCS4A01G164600	Gene3D:2.60.40.640	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Vps26-related
PANTHER:PTHR12233	PANTHER:PTHR12233:SF13	PFAM:PF03643	MapMan:22.5.5.3.3	:	:

Description

No Description!

Coordinates

chr4A:-:381220238..381227872

Molecular Weight (calculated)

35386.6 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.366

Length

304 amino acids

Sequence
(BLAST)

001: MNYIIGAFKP PCDIFVTFSD ERSRKQVAVK KDNGKTTMVP AFQSLETIAG EVSIAPVPGK RIEHMGVKIE LLGQIELYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF STVEMPYESY NGTNVRLRYI LKVTIGRNYV GNIVESRDFC VRNYSPLPSI NNSIKMEVGI EDCLHIEFEY SKSKYHLKDV IVGKIYFLLV
201: RIKIKNMELE IRRRESTGSG PNTYVETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT YRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EINMFRLDET
301: PQPS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.