Factsheet for Bra022659.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Bra002092.1-P	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003049.1-P	Field mustard	cytosol	83.67	95.03
AT5G53530.1	Thale cress	cytosol	83.38	94.7
CDY28831	Canola	cytosol	87.46	93.46
Bra026315.1-P	Field mustard	cytosol	79.3	89.77
KRH62711	Soybean	endoplasmic reticulum	77.26	87.75
KRH56246	Soybean	endoplasmic reticulum	77.26	87.75
Solyc04g050240.2.1	Tomato	plastid	76.68	87.38
Zm00001d023738_P001	Maize	extracellular, plasma membrane	69.97	78.95
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	69.97	78.95
TraesCS4A01G164600.2	Wheat	cytosol	69.97	78.95
HORVU4Hr1G031010.1	Barley	cytosol	69.97	78.95
EES16015	Sorghum	cytosol	69.97	78.95
Zm00001d007296_P001	Maize	cytosol, extracellular	69.39	78.29
TraesCSU01G067300.1	Wheat	cytosol	65.89	78.2
OQU83889	Sorghum	cytosol	48.69	78.04
Os11t0629200-01	Rice	cytosol, plasma membrane	67.06	75.66
GSMUA_Achr5P05770_001	Banana	cytosol	69.39	75.56
Os12t0500700-01	Rice	plasma membrane	67.06	75.16
GSMUA_Achr5P23810_001	Banana	golgi	67.93	72.59
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	87.46	72.12
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	76.97	70.4
Os03t0679100-01	Rice	cytosol	11.37	67.24

Protein Annotations

EnsemblPlants:Bra022659.1	EnsemblPlants:Bra022659.1-P	EnsemblPlantsGene:Bra022659	Gene3D:2.60.40.640	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Ig_E-set	InterPro:Vps26-related
PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	PFAM:PF03643	SUPFAM:SSF81296	UniParc:UPI0002546BFE	UniProt:M4E1K9
MapMan:22.5.5.3.3	:	:	:	:	:

Description

AT5G53530 (E=5e-087) VPS26A | VPS26A (VACUOLAR PROTEIN SORTING 26A)

Coordinates

chrA02:+:8192446..8194233

Molecular Weight (calculated)

39564.8 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.316

Length

343 amino acids

Sequence
(BLAST)

001: MNYLRGAFKP ACNISITFTD GKNRKQVPVK KDNGQMVMNP LFHSQETIAG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YENKAYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYSPLPPI NNSIKVRSKL SQFPGSLSLF ILNPFALKPL LASDMLNSFG
201: PLLDVQMEVG IEDCLHIEFE YNKSKYHLKD VILGKVYFLL VRIKIKNMDL EIRRRESTGA GANTHVETET LAKFELMDGA PVRGESIPVR LFLTPYDLTP
301: THKNINNKFS VKYYLNLVLV DEEDRRYFKQ QEITLYRLKD ESS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.