Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0023g03870.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53530.1 | VIT_04s0023g03870.t01 | AT2G17790.1 | 17889650 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g050240.2.1 | Tomato | plastid | 74.67 | 93.02 |
| KRH62711 | Soybean | endoplasmic reticulum | 72.53 | 90.07 |
| KRH56246 | Soybean | endoplasmic reticulum | 72.53 | 90.07 |
| CDY72159 | Canola | cytosol | 34.93 | 89.12 |
| AT5G53530.1 | Thale cress | cytosol | 71.2 | 88.41 |
| Bra003049.1-P | Field mustard | cytosol | 71.2 | 88.41 |
| AT4G27690.1 | Thale cress | cytosol | 70.4 | 87.13 |
| Bra026315.1-P | Field mustard | cytosol | 69.87 | 86.47 |
| GSMUA_Achr5P05770_001 | Banana | cytosol | 69.6 | 82.86 |
| CDY28831 | Canola | cytosol | 70.67 | 82.55 |
| CDY55345 | Canola | endoplasmic reticulum | 70.93 | 82.35 |
| CDY19034 | Canola | cytosol, endoplasmic reticulum | 68.53 | 82.11 |
| Zm00001d023738_P001 | Maize | extracellular, plasma membrane | 66.13 | 81.58 |
| Zm00001d007296_P001 | Maize | cytosol, extracellular | 66.13 | 81.58 |
| EES16015 | Sorghum | cytosol | 66.13 | 81.58 |
| TraesCSU01G067300.1 | Wheat | cytosol | 62.67 | 81.31 |
| TraesCS4A01G164600.2 | Wheat | cytosol | 65.6 | 80.92 |
| TraesCS4D01G148600.1 | Wheat | cytosol, golgi, unclear | 65.6 | 80.92 |
| HORVU4Hr1G031010.1 | Barley | cytosol | 65.07 | 80.26 |
| OQU83889 | Sorghum | cytosol | 45.33 | 79.44 |
| Os11t0629200-01 | Rice | cytosol, plasma membrane | 64.0 | 78.95 |
| VIT_06s0009g01880.t01 | Wine grape | cytosol | 69.87 | 78.92 |
| Os12t0500700-01 | Rice | plasma membrane | 63.2 | 77.45 |
| GSMUA_Achr5P23810_001 | Banana | golgi | 66.13 | 77.26 |
| Bra022659.1-P | Field mustard | cytosol | 70.4 | 76.97 |
| Os03t0679100-01 | Rice | cytosol | 10.67 | 68.97 |
| CDY14373 | Canola | cytosol, plastid | 62.67 | 67.92 |
| CDX96231 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 71.47 | 64.42 |
Protein Annotations
| EntrezGene:100250336 | wikigene:100250336 | Gene3D:2.60.40.640 | MapMan:22.5.5.3.3 | InterPro:Arrestin_C | ProteinID:CCB48071 |
| ProteinID:CCB48071.1 | UniProt:F6H7D7 | EMBL:FN595247 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0030904 | GO:GO:0042147 | InterPro:IPR014752 | EntrezGene:LOC100250336 | wikigene:LOC100250336 |
| PFAM:PF03643 | PANTHER:PTHR12233 | PANTHER:PTHR12233:SF12 | TIGR:TC66720 | TIGR:TC68823 | UniParc:UPI000210A6A5 |
| ArrayExpress:VIT_16s0098g01270 | EnsemblPlantsGene:VIT_16s0098g01270 | EnsemblPlants:VIT_16s0098g01270.t01 | InterPro:Vps26-related | RefSeq:XP_002274585 | RefSeq:XP_002274585.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:21530831..21537512
Molecular Weight (calculated)
43516.7 Da
IEP (calculated)
8.983
GRAVY (calculated)
-0.259
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFFNKKITI NTINLIYCVV VRISTVESHR SIHRVRFTSC FISAKDSLIS ILRFLRLRFP TPALSQFGFC STNCENYLIG AFKPSCNISI TFADGKSRKQ
101: VPIKKENGQT VMVPLFQSQE NISGKISIEP LQGKKVEHNG VKIELLGQIE MYFDRGNFYD FTSLVRELDV PGEIYERKTY PFEFSTVEMP YETYNGVNVR
201: LRYVLKVTIS RGYGGSIVEY QDFVVRNYTP PPEINTSIKM EVGIEDCLHI EFEYNKSKYH LKDVIIGKIY FLLVRIKIKN MDLEIRRRES TGSGANTHVE
301: TETLAKFELM DGAPVRGESI PIRLFLSPYE LTPTHRNINN KFSVKYYLNL VLVDEEDRRY FKQQEITVYR LPETS
101: VPIKKENGQT VMVPLFQSQE NISGKISIEP LQGKKVEHNG VKIELLGQIE MYFDRGNFYD FTSLVRELDV PGEIYERKTY PFEFSTVEMP YETYNGVNVR
201: LRYVLKVTIS RGYGGSIVEY QDFVVRNYTP PPEINTSIKM EVGIEDCLHI EFEYNKSKYH LKDVIIGKIY FLLVRIKIKN MDLEIRRRES TGSGANTHVE
301: TETLAKFELM DGAPVRGESI PIRLFLSPYE LTPTHRNINN KFSVKYYLNL VLVDEEDRRY FKQQEITVYR LPETS
001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
Arabidopsis Description
VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.