CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20826
CDY24377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	CDY20826	AT2G17790.1	17889650
AT5G53530.1	CDY24377	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0679100-01	Rice	cytosol	27.21	68.97
Bra003049.1-P	Field mustard	cytosol	99.32	48.34
AT5G53530.1	Thale cress	cytosol	93.88	45.7
CDY28831	Canola	cytosol	95.24	43.61
Solyc04g050240.2.1	Tomato	plastid	87.76	42.86
KRH62711	Soybean	endoplasmic reticulum	87.76	42.72
KRH56246	Soybean	endoplasmic reticulum	87.76	42.72
CDY14373	Canola	cytosol, plastid	99.32	42.2
CDY55345	Canola	endoplasmic reticulum	89.12	40.56
CDY19034	Canola	cytosol, endoplasmic reticulum	84.35	39.62
HORVU4Hr1G031010.1	Barley	cytosol	80.27	38.82
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	80.27	38.82
TraesCS4A01G164600.2	Wheat	cytosol	80.27	38.82
EES16015	Sorghum	cytosol	78.23	37.83
Zm00001d023738_P001	Maize	extracellular, plasma membrane	78.23	37.83
Zm00001d007296_P001	Maize	cytosol, extracellular	78.23	37.83
GSMUA_Achr5P05770_001	Banana	cytosol	78.91	36.83
Os11t0629200-01	Rice	cytosol, plasma membrane	75.51	36.51
OQU83889	Sorghum	cytosol	53.06	36.45
Os12t0500700-01	Rice	plasma membrane	75.51	36.27
TraesCSU01G067300.1	Wheat	cytosol	70.75	35.99
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	89.12	34.93
GSMUA_Achr5P23810_001	Banana	golgi	76.19	34.89
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	96.6	34.13

Protein Annotations

Gene3D:2.60.40.640	MapMan:22.5.5.3.3	UniProt:A0A078JZN1	InterPro:Arrestin_C	EnsemblPlants:CDY72159	ProteinID:CDY72159
ProteinID:CDY72159.1	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00025367001
InterPro:IPR014752	InterPro:Ig_E-set	PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	SUPFAM:SSF81296
UniParc:UPI0004EDD04C	InterPro:Vps26-related	:	:	:	:

Description

BnaCnng76240DBnaCnng76240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZN1]

Coordinates

chrLK049300:+:375..2221

Molecular Weight (calculated)

17057.4 Da

IEP (calculated)

5.022

GRAVY (calculated)

-0.392

Length

147 amino acids

Sequence
(BLAST)

001: MNPLFQSQET IAGKVLIEPY QGKKVEHNGV KVELLGQIEM YFDRGNFYDF TSLVRELDVP GEIYEKKAYP FEFSTVEMPH ETYNGVNVRL RYVLKVTVTR
101: GYGGSIVEYQ DFVVRNYSPL PPINNSIKME VGIEDCLHIE FEYNKSK

Best Arabidopsis Sequence Match ( AT4G27690.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFSD GKNRKQVPMK KENGQTALVP LFHSQDTISG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS

Arabidopsis Description

VPS26BVPS26B [Source:UniProtKB/TrEMBL;Acc:A0A178UZ41]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.