Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53530.1 | CDY20826 | AT2G17790.1 | 17889650 |
| AT5G53530.1 | CDY24377 | AT2G17790.1 | 17889650 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72159 | Canola | cytosol | 43.61 | 95.24 |
| AT5G53530.1 | Thale cress | cytosol | 88.47 | 94.04 |
| Bra022659.1-P | Field mustard | cytosol | 93.46 | 87.46 |
| KRH62711 | Soybean | endoplasmic reticulum | 81.93 | 87.09 |
| KRH56246 | Soybean | endoplasmic reticulum | 81.93 | 87.09 |
| Solyc04g050240.2.1 | Tomato | plastid | 81.31 | 86.71 |
| CDY55345 | Canola | endoplasmic reticulum | 85.67 | 85.14 |
| CDY19034 | Canola | cytosol, endoplasmic reticulum | 82.55 | 84.66 |
| Zm00001d023738_P001 | Maize | extracellular, plasma membrane | 74.45 | 78.62 |
| TraesCS4D01G148600.1 | Wheat | cytosol, golgi, unclear | 74.45 | 78.62 |
| TraesCS4A01G164600.2 | Wheat | cytosol | 74.45 | 78.62 |
| HORVU4Hr1G031010.1 | Barley | cytosol | 74.45 | 78.62 |
| EES16015 | Sorghum | cytosol | 74.45 | 78.62 |
| OQU83889 | Sorghum | cytosol | 52.02 | 78.04 |
| Zm00001d007296_P001 | Maize | cytosol, extracellular | 73.83 | 77.96 |
| TraesCSU01G067300.1 | Wheat | cytosol | 70.09 | 77.85 |
| GSMUA_Achr5P05770_001 | Banana | cytosol | 74.14 | 75.56 |
| Os11t0629200-01 | Rice | cytosol, plasma membrane | 71.34 | 75.33 |
| Os12t0500700-01 | Rice | plasma membrane | 71.34 | 74.84 |
| GSMUA_Achr5P23810_001 | Banana | golgi | 72.9 | 72.9 |
| CDY14373 | Canola | cytosol, plastid | 77.88 | 72.25 |
| CDX96231 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 93.46 | 72.12 |
| VIT_16s0098g01270.t01 | Wine grape | endoplasmic reticulum, vacuole | 82.55 | 70.67 |
| Os03t0679100-01 | Rice | cytosol | 12.15 | 67.24 |
Protein Annotations
| EnsemblPlants:CDY28831 | EnsemblPlantsGene:GSBRNA2T00041497001 | Gene3D:2.60.40.640 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Arrestin_C | InterPro:IPR014752 | InterPro:Ig_E-set | InterPro:Vps26-related | PANTHER:PTHR12233 |
| PANTHER:PTHR12233:SF12 | PFAM:PF03643 | ProteinID:CDY28831 | ProteinID:CDY28831.1 | SUPFAM:SSF81296 | UniParc:UPI0004EDD083 |
| UniProt:A0A078GTK8 | MapMan:22.5.5.3.3 | : | : | : | : |
Description
BnaA02g10230DBnaA02g10230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTK8]
Coordinates
chrLK032226:+:526179..528542
Molecular Weight (calculated)
37215.9 Da
IEP (calculated)
7.127
GRAVY (calculated)
-0.336
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLNRVIVIG IESSESWLVL NYLRGAFKPA CNISITFTDG KNRKQVPVKK DNGQMVMNPL FHSQETIAGN VCIEPYQGKK VEHNGVKVEL LGQIEMYFDR
101: GNFYDFTSLV RELDVPGEIY ENKAYPFEFP TVEMPYETYN GVNVRLRYVL KVTVTRGYAG SIVEYQDFVV RNYSPLPPIN NSIKMEVGIE DCLHIEFEYN
201: KSKYHLKDVI LGKVYFLLVR IKIKNMDLEI RRRESTGAGA NTHVETETLA KFELMDGAPV RGESIPVRLF LTPYDLTPTH KNINNKFSVK YYLNLVLVDE
301: EDRRYFKQQE ITLYRLKDES S
101: GNFYDFTSLV RELDVPGEIY ENKAYPFEFP TVEMPYETYN GVNVRLRYVL KVTVTRGYAG SIVEYQDFVV RNYSPLPPIN NSIKMEVGIE DCLHIEFEYN
201: KSKYHLKDVI LGKVYFLLVR IKIKNMDLEI RRRESTGAGA NTHVETETLA KFELMDGAPV RGESIPVRLF LTPYDLTPTH KNINNKFSVK YYLNLVLVDE
301: EDRRYFKQQE ITLYRLKDES S
001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
Arabidopsis Description
VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.