Factsheet for Os12t0500700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0801600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Os03t0801600-01	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16015	Sorghum	cytosol	88.89	89.47
Zm00001d023738_P001	Maize	extracellular, plasma membrane	88.56	89.14
Os11t0629200-01	Rice	cytosol, plasma membrane	84.64	85.2
Solyc04g050240.2.1	Tomato	plastid	78.76	80.07
GSMUA_Achr5P05770_001	Banana	cytosol	80.07	77.78
Os03t0679100-01	Rice	cytosol	14.71	77.59
Bra003049.1-P	Field mustard	cytosol	76.14	77.15
AT5G53530.1	Thale cress	cytosol	74.84	75.83
CDY72159	Canola	cytosol	36.27	75.51
Bra026315.1-P	Field mustard	cytosol	74.51	75.25
AT4G27690.1	Thale cress	cytosol	74.51	75.25
GSMUA_Achr5P23810_001	Banana	golgi	78.76	75.08
VIT_06s0009g01880.t01	Wine grape	cytosol	77.45	71.39
CDY28831	Canola	cytosol	74.84	71.34
CDY55345	Canola	endoplasmic reticulum	74.84	70.9
CDY19034	Canola	cytosol, endoplasmic reticulum	72.22	70.61
Bra022659.1-P	Field mustard	cytosol	75.16	67.06
KRG89789	Soybean	plastid	36.27	63.79
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	77.45	63.2
CDY14373	Canola	cytosol, plastid	65.36	57.8
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	75.16	55.29

Protein Annotations

Gene3D:2.60.40.640	MapMan:22.5.5.3.3	EntrezGene:4352271	ProteinID:ABA99011.2	EMBL:AK073408	InterPro:Arrestin_C
ProteinID:BAF29838.1	ProteinID:BAT17249.1	ProteinID:EAZ20577.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008565	GO:GO:0009987
GO:GO:0016020	GO:GO:0030904	GO:GO:0042147	InterPro:IPR014752	EnsemblPlantsGene:Os12g0500700	EnsemblPlants:Os12t0500700-01
PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF13	UniProt:Q2QQB3	UniParc:UPI0000D89DD2	InterPro:Vps26-related
RefSeq:XP_015618464.1	:	:	:	:	:

Description

Similar to Vacuolar sorting protein-like; embryogenesis protein H beta 58-like protein. (Os12t0500700-01)

Coordinates

chr12:+:19055747..19060976

Molecular Weight (calculated)

35381.9 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.228

Length

306 amino acids

Sequence
(BLAST)

001: MNYIVGAFKP PCDISIAFSD ARSRKQIAVK NDNGRTVMVP VFQSLETISG EVSVVPVPGK RIEHLGVKIE LLGQIELYLE RGKFYDFTSL VRELDIPGEI
101: YEKKTYPFEF STVEMPYESY NGTNVRLRYI LKVTISRNIM GMGSIVEFRE FCVRNYSPAP TINNSIKMEV GIEDCLHIEF EYSKSKYHLK DVIIGKIYFL
201: LVRIKIKNME LEVRRRESTG AGSSAYVETE TLAKFELMDG APVRGESIPV RLFLTPYELT PSYRNINNKF SVKYYLNLVL VDEEDRRYFK QQEITMYRLL
301: ETPQAS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.