Factsheet for Bra003049.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Bra002092.1-P	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72159	Canola	cytosol	48.34	99.32
AT5G53530.1	Thale cress	cytosol	95.03	95.03
Bra026315.1-P	Field mustard	cytosol	89.74	89.44
KRH62711	Soybean	endoplasmic reticulum	88.74	88.74
KRH56246	Soybean	endoplasmic reticulum	88.74	88.74
Solyc04g050240.2.1	Tomato	plastid	87.42	87.71
Bra022659.1-P	Field mustard	cytosol	95.03	83.67
Zm00001d023738_P001	Maize	extracellular, plasma membrane	80.13	79.61
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	80.13	79.61
TraesCS4A01G164600.2	Wheat	cytosol	80.13	79.61
HORVU4Hr1G031010.1	Barley	cytosol	80.13	79.61
EES16015	Sorghum	cytosol	80.13	79.61
Zm00001d007296_P001	Maize	cytosol, extracellular	79.8	79.28
TraesCSU01G067300.1	Wheat	cytosol	75.5	78.89
OQU83889	Sorghum	cytosol	55.3	78.04
Os11t0629200-01	Rice	cytosol, plasma membrane	77.81	77.3
GSMUA_Achr5P05770_001	Banana	cytosol	79.8	76.51
Os12t0500700-01	Rice	plasma membrane	77.15	76.14
CDY14373	Canola	cytosol, plastid	87.09	76.01
GSMUA_Achr5P23810_001	Banana	golgi	78.15	73.52
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	88.41	71.2
Os03t0679100-01	Rice	cytosol	13.24	68.97

Protein Annotations

EnsemblPlants:Bra003049.1	EnsemblPlants:Bra003049.1-P	EnsemblPlantsGene:Bra003049	Gene3D:2.60.40.640	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Ig_E-set	InterPro:Vps26-related
PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	PFAM:PF03643	SUPFAM:SSF81296	UniParc:UPI0002543B03	UniProt:M4CFR7
MapMan:22.5.5.3.3	:	:	:	:	:

Description

AT5G53530 (E=3e-167) VPS26A | VPS26A (VACUOLAR PROTEIN SORTING 26A)

Coordinates

chrA10:-:5693205..5695156

Molecular Weight (calculated)

34990.2 Da

IEP (calculated)

7.594

GRAVY (calculated)

-0.386

Length

302 amino acids

Sequence
(BLAST)

001: MNYLLGAFKP ACNVSITFTD GKNRKQVPIK KDNGQTVMNP LFQSQETIAG KVIIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YEKKAYPFEF STVEMPHETY NGVNVRLRYV LKVTVTRGYG GSIVEYQDFV VRNYSPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRL FLTPYDLTPT LTNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.