Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003049.1-P | Field mustard | cytosol | 95.03 | 95.03 |
| CDY72159 | Canola | cytosol | 45.7 | 93.88 |
| AT4G27690.1 | Thale cress | cytosol | 91.06 | 90.76 |
| KRH62711 | Soybean | endoplasmic reticulum | 89.07 | 89.07 |
| KRH56246 | Soybean | endoplasmic reticulum | 89.07 | 89.07 |
| CDY28831 | Canola | cytosol | 94.04 | 88.47 |
| Solyc04g050240.2.1 | Tomato | plastid | 87.75 | 88.04 |
| Bra022659.1-P | Field mustard | cytosol | 94.7 | 83.38 |
| EES16015 | Sorghum | cytosol | 79.47 | 78.95 |
| HORVU4Hr1G031010.1 | Barley | cytosol | 79.47 | 78.95 |
| Zm00001d023738_P001 | Maize | extracellular, plasma membrane | 79.47 | 78.95 |
| TraesCS4A01G164600.2 | Wheat | cytosol | 79.47 | 78.95 |
| TraesCS4D01G148600.1 | Wheat | cytosol, golgi, unclear | 79.47 | 78.95 |
| Zm00001d007296_P001 | Maize | cytosol, extracellular | 79.14 | 78.62 |
| TraesCSU01G067300.1 | Wheat | cytosol | 75.17 | 78.55 |
| OQU83889 | Sorghum | cytosol | 54.97 | 77.57 |
| GSMUA_Achr5P05770_001 | Banana | cytosol | 79.8 | 76.51 |
| Os11t0629200-01 | Rice | cytosol, plasma membrane | 76.82 | 76.32 |
| Os12t0500700-01 | Rice | plasma membrane | 75.83 | 74.84 |
| GSMUA_Achr5P23810_001 | Banana | golgi | 77.15 | 72.59 |
| CDY14373 | Canola | cytosol, plastid | 82.12 | 71.68 |
| VIT_16s0098g01270.t01 | Wine grape | endoplasmic reticulum, vacuole | 88.41 | 71.2 |
| CDX96231 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 94.37 | 68.51 |
| Os03t0679100-01 | Rice | cytosol | 12.91 | 67.24 |
Protein Annotations
| Gene3D:2.60.40.640 | MapMan:22.5.5.3.3 | EntrezGene:835435 | UniProt:A0A178UT36 | ProteinID:AED96373.1 | EMBL:AK227917 |
| ArrayExpress:AT5G53530 | EnsemblPlantsGene:AT5G53530 | RefSeq:AT5G53530 | TAIR:AT5G53530 | RefSeq:AT5G53530-TAIR-G | EnsemblPlants:AT5G53530.1 |
| TAIR:AT5G53530.1 | InterPro:Arrestin_C | ProteinID:BAB09729.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005771 | GO:GO:0005794 |
| GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008565 | GO:GO:0009987 | GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0030904 |
| GO:GO:0031902 | GO:GO:0042147 | GO:GO:0043231 | InterPro:IPR014752 | RefSeq:NP_200165.1 | ProteinID:OAO96507.1 |
| PFAM:PF03643 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12233 | PANTHER:PTHR12233:SF12 |
| UniProt:Q9FJD0 | UniParc:UPI000009ED26 | Symbol:VPS26A | InterPro:Vps26-related | : | : |
Description
VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
Coordinates
chr5:-:21745937..21748719
Molecular Weight (calculated)
35152.3 Da
IEP (calculated)
8.131
GRAVY (calculated)
-0.421
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.