Factsheet for Os03t0679100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0801600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Os03t0801600-01	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72159	Canola	cytosol	68.97	27.21
Os11t0629200-01	Rice	cytosol, plasma membrane	89.66	17.11
TraesCSU01G067300.1	Wheat	cytosol	79.31	15.92
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	82.76	15.79
TraesCS4A01G164600.2	Wheat	cytosol	82.76	15.79
HORVU4Hr1G031010.1	Barley	cytosol	82.76	15.79
Zm00001d007296_P001	Maize	cytosol, extracellular	79.31	15.13
Os12t0500700-01	Rice	plasma membrane	77.59	14.71
GSMUA_Achr5P05770_001	Banana	cytosol	72.41	13.33
Bra003049.1-P	Field mustard	cytosol	68.97	13.24
AT5G53530.1	Thale cress	cytosol	67.24	12.91
Solyc04g050240.2.1	Tomato	plastid	65.52	12.62
Bra026315.1-P	Field mustard	cytosol	63.79	12.21
AT4G27690.1	Thale cress	cytosol	63.79	12.21
CDY28831	Canola	cytosol	67.24	12.15
CDY19034	Canola	cytosol, endoplasmic reticulum	65.52	12.14
GSMUA_Achr5P23810_001	Banana	golgi	65.52	11.84
CDY55345	Canola	endoplasmic reticulum	65.52	11.76
CDY14373	Canola	cytosol, plastid	68.97	11.56
VIT_06s0009g01880.t01	Wine grape	cytosol	65.52	11.45
Bra022659.1-P	Field mustard	cytosol	67.24	11.37
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	68.97	10.67
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.24	9.38
OQU83889	Sorghum	cytosol	6.9	1.87
KRG89789	Soybean	plastid	5.17	1.72

Protein Annotations

Gene3D:2.60.40.640	MapMan:35.2	InterPro:Arrestin_C	ProteinID:BAF12809.2	ProteinID:BAS85740.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008565	GO:GO:0009987	GO:GO:0016020	GO:GO:0030904	GO:GO:0042147	InterPro:IPR014752
EnsemblPlantsGene:Os03g0679100	EnsemblPlants:Os03t0679100-01	PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF13	UniProt:Q0DPM9
UniParc:UPI0001B66A16	InterPro:Vps26-related	:	:	:	:

Description

Vacuolar protein sorting-associated protein 26 family protein. (Os03t0679100-01)

Coordinates

chr3:-:26894662..26898506

Molecular Weight (calculated)

6441.8 Da

IEP (calculated)

6.229

GRAVY (calculated)

0.047

Length

58 amino acids

Sequence
(BLAST)

1: MVLAFQSLET IAGEVSIAPI PGKRVEHQGV KIELLGQIEL YHERGHFYDF TSLGSSLK

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.