Factsheet for Solyc04g050240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083560.2.1
Solyc03g033400.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Solyc02g083560.2.1	AT2G17790.1	17889650
AT5G53530.1	Solyc03g033400.2.1	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56246	Soybean	endoplasmic reticulum	90.37	90.07
KRH62711	Soybean	endoplasmic reticulum	90.03	89.74
CDY72159	Canola	cytosol	42.86	87.76
AT5G53530.1	Thale cress	cytosol	88.04	87.75
Bra003049.1-P	Field mustard	cytosol	87.71	87.42
Bra026315.1-P	Field mustard	cytosol	86.71	86.14
AT4G27690.1	Thale cress	cytosol	86.38	85.81
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	84.05	83.22
TraesCS4A01G164600.2	Wheat	cytosol	84.05	83.22
TraesCSU01G067300.1	Wheat	cytosol	79.4	82.7
HORVU4Hr1G031010.1	Barley	cytosol	83.39	82.57
Zm00001d023738_P001	Maize	extracellular, plasma membrane	83.06	82.24
EES16015	Sorghum	cytosol	83.06	82.24
GSMUA_Achr5P05770_001	Banana	cytosol	85.38	81.59
Zm00001d007296_P001	Maize	cytosol, extracellular	82.39	81.58
CDY28831	Canola	cytosol	86.71	81.31
OQU83889	Sorghum	cytosol	57.48	80.84
CDY19034	Canola	cytosol, endoplasmic reticulum	83.72	80.51
CDY55345	Canola	endoplasmic reticulum	86.38	80.5
Os11t0629200-01	Rice	cytosol, plasma membrane	81.06	80.26
Os12t0500700-01	Rice	plasma membrane	80.07	78.76
Bra022659.1-P	Field mustard	cytosol	87.38	76.68
GSMUA_Achr5P23810_001	Banana	golgi	81.4	76.32
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	93.02	74.67
CDY14373	Canola	cytosol, plastid	76.41	66.47
Os03t0679100-01	Rice	cytosol	12.62	65.52
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	87.04	62.98

Protein Annotations

Gene3D:2.60.40.640	MapMan:22.5.5.3.3	InterPro:Arrestin_C	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008565	GO:GO:0009987
GO:GO:0016020	GO:GO:0030904	GO:GO:0042147	InterPro:IPR014752	UniProt:K4BRZ6	PFAM:PF03643
PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	EnsemblPlantsGene:Solyc04g050240.2	EnsemblPlants:Solyc04g050240.2.1	UniParc:UPI0002766BDD	InterPro:Vps26-related

Description

No Description!

Coordinates

chr4:-:46307650..46323693

Molecular Weight (calculated)

34937.1 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.371

Length

301 amino acids

Sequence
(BLAST)

001: MNYIIGAFKP ACNISITFGD GKSRKQVPLK KENGQTVMVP LFQSQENIAG KISVEPVSGK KVEHNGIKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF STVEMPYETY NGVNVRLRYI LKITISRGYA GSIVEYQDFV VRNYSPPPSI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV IIGKIYFLLV
201: RIKIKNMDLE IRRRESTGSG ANTHVETETL AKFELMDGAP VRGESIPIRL FLSPYELTPT YRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITMFRLEET
301: S

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.