Factsheet for Zm00001d023738_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013059_P003
Zm00001d034492_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	Zm00001d013059_P003	AT2G17790.1	17889650
AT5G53530.1	Zm00001d034492_P006	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16015	Sorghum	cytosol	99.67	99.67
Zm00001d007296_P001	Maize	cytosol, extracellular	91.45	91.45
Os12t0500700-01	Rice	plasma membrane	89.14	88.56
GSMUA_Achr5P05770_001	Banana	cytosol	86.51	83.49
Solyc04g050240.2.1	Tomato	plastid	82.24	83.06
Bra003049.1-P	Field mustard	cytosol	79.61	80.13
AT5G53530.1	Thale cress	cytosol	78.95	79.47
AT4G27690.1	Thale cress	cytosol	78.29	78.55
CDY72159	Canola	cytosol	37.83	78.23
GSMUA_Achr5P23810_001	Banana	golgi	82.57	78.19
Bra026315.1-P	Field mustard	cytosol	77.63	77.89
VIT_06s0009g01880.t01	Wine grape	cytosol	82.24	75.3
CDY28831	Canola	cytosol	78.62	74.45
CDY55345	Canola	endoplasmic reticulum	78.62	73.99
CDY19034	Canola	cytosol, endoplasmic reticulum	75.99	73.8
Bra022659.1-P	Field mustard	cytosol	78.95	69.97
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	81.58	66.13
KRG89789	Soybean	plastid	36.84	64.37
CDY14373	Canola	cytosol, plastid	68.42	60.12
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	78.62	57.45

Protein Annotations

EntrezGene:100282332	Gene3D:2.60.40.640	MapMan:22.5.5.3.3	ProteinID:AQK39935.1	InterPro:Arrestin_C	UniProt:B4FT16
EMBL:BT040254	EMBL:EU960525	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:IPR014752	PFAM:PF03643	PANTHER:PTHR12233	PANTHER:PTHR12233:SF13	UniParc:UPI00017B7E8F	InterPro:Vps26-related
EnsemblPlantsGene:Zm00001d023738	EnsemblPlants:Zm00001d023738_P001	EnsemblPlants:Zm00001d023738_T001	:	:	:

Description

vacuolar protein sorting homolog26 vacuolar protein sorting homolog26

Coordinates

chr10:-:18083447..18098690

Molecular Weight (calculated)

35335.5 Da

IEP (calculated)

7.418

GRAVY (calculated)

-0.345

Length

304 amino acids

Sequence
(BLAST)

001: MNYIIGAFKP PCDISITFSD ARTRKQVSVK KDNGKTTMVP VFQSLETISG EVSIAPVPGK RIEHTGVKIE LLGQIELYFD RGNFYDFTSL VRELDIPGEI
101: YERKTFPFEF STVEMPYESY NGTNVRLRYI LKVTIGRNYV GNIVEYRDFC VRNYSPVPTI NNSIKMEVGI EDCLHIEFEY SKSKYHLNDV IIGKIYFLLV
201: RIKIKNMELE IRRRESTGSG SNTYVETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT YRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITMYRLQES
301: PPAS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.