CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20826
CDY24377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	CDY20826	AT2G17790.1	17889650
AT5G53530.1	CDY24377	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72159	Canola	cytosol	42.2	99.32
Bra003049.1-P	Field mustard	cytosol	76.01	87.09
AT5G53530.1	Thale cress	cytosol	71.68	82.12
CDY28831	Canola	cytosol	72.25	77.88
KRH62711	Soybean	endoplasmic reticulum	66.76	76.49
KRH56246	Soybean	endoplasmic reticulum	66.76	76.49
Solyc04g050240.2.1	Tomato	plastid	66.47	76.41
CDY55345	Canola	endoplasmic reticulum	68.5	73.37
CDY19034	Canola	cytosol, endoplasmic reticulum	66.19	73.16
HORVU4Hr1G031010.1	Barley	cytosol	61.27	69.74
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	61.27	69.74
TraesCS4A01G164600.2	Wheat	cytosol	61.27	69.74
Zm00001d007296_P001	Maize	cytosol, extracellular	60.69	69.08
Os03t0679100-01	Rice	cytosol	11.56	68.97
TraesCSU01G067300.1	Wheat	cytosol	57.23	68.51
EES16015	Sorghum	cytosol	60.12	68.42
Zm00001d023738_P001	Maize	extracellular, plasma membrane	60.12	68.42
GSMUA_Achr5P05770_001	Banana	cytosol	61.27	67.3
Os11t0629200-01	Rice	cytosol, plasma membrane	58.67	66.78
Os12t0500700-01	Rice	plasma membrane	57.8	65.36
GSMUA_Achr5P23810_001	Banana	golgi	58.96	63.55
OQU83889	Sorghum	cytosol	39.02	63.08
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	67.92	62.67
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	74.57	62.02

Protein Annotations

EnsemblPlants:CDY14373	EnsemblPlantsGene:GSBRNA2T00079004001	Gene3D:2.60.40.640	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Ig_E-set	InterPro:Vps26-related	PANTHER:PTHR12233
PANTHER:PTHR12233:SF12	PFAM:PF03643	ProteinID:CDY14373	ProteinID:CDY14373.1	SUPFAM:SSF81296	UniParc:UPI0004EF405C
UniProt:A0A078FPV5	MapMan:22.5.5.3.3	:	:	:	:

Description

BnaA10g06820DBnaA10g06820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPV5]

Coordinates

chrLK032042:+:466563..469526

Molecular Weight (calculated)

39436.9 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.179

Length

346 amino acids

Sequence
(BLAST)

001: MVFANSLVLG VQSTDSTLDQ IGESVSSIVF NPTVRNLRRF DLIRVPAVSD RVSPRKVTVI LRSNLLIMNY LLGAFKPACN VSITFTDGKN RKQVPIKKDN
101: GQTVMNPLFQ SQETIAGKVI IEPYQGKKVE HNGVKVELLG QIEMYFDRGN FYDFTSLVRE LDVPGEIYEK KAYPFEFSTV EMPHETYNGV NVRLRYVLKV
201: TVTRGYGGSI VEYQDFVVRN YSPLPPINNS IKMEVGIEDC LHIEFEYNKS KYHLKDVILG KIYFLLVRIK IKNMDLEIRR RESTGAGANT HVETETLAKF
301: ELMDGAPVRG ESIPVRLFLT PYDLTPTLTI YAHIHVNIIY TKDKPQ

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.