CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	EER93269	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007296_P001	Maize	cytosol, extracellular	90.65	63.82
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	89.72	63.16
TraesCS4A01G164600.2	Wheat	cytosol	89.72	63.16
EES16015	Sorghum	cytosol	89.25	62.83
HORVU4Hr1G031010.1	Barley	cytosol	88.78	62.5
TraesCSU01G067300.1	Wheat	cytosol	83.64	61.94
Os11t0629200-01	Rice	cytosol, plasma membrane	85.98	60.53
Solyc04g050240.2.1	Tomato	plastid	80.84	57.48
Bra003049.1-P	Field mustard	cytosol	78.04	55.3
GSMUA_Achr5P05770_001	Banana	cytosol	81.31	55.24
AT5G53530.1	Thale cress	cytosol	77.57	54.97
KRG89789	Soybean	plastid	44.39	54.6
AT4G27690.1	Thale cress	cytosol	77.1	54.46
Bra026315.1-P	Field mustard	cytosol	76.17	53.8
GSMUA_Achr5P23810_001	Banana	golgi	79.91	53.27
CDY72159	Canola	cytosol	36.45	53.06
CDY28831	Canola	cytosol	78.04	52.02
VIT_06s0009g01880.t01	Wine grape	cytosol	79.91	51.51
CDY55345	Canola	endoplasmic reticulum	77.57	51.39
CDY19034	Canola	cytosol, endoplasmic reticulum	73.83	50.48
Bra022659.1-P	Field mustard	cytosol	78.04	48.69
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	79.44	45.33
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	78.04	40.14
CDY14373	Canola	cytosol, plastid	63.08	39.02
Os03t0679100-01	Rice	cytosol	1.87	6.9

Protein Annotations

EnsemblPlants:OQU83889	EnsemblPlantsGene:SORBI_3005G194500	Gene3D:2.60.40.640	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Vps26-related	PANTHER:PTHR12233	PANTHER:PTHR12233:SF13
PFAM:PF03643	ProteinID:OQU83889	ProteinID:OQU83889.1	UniParc:UPI000B8BAE28	UniProt:A0A1Z5RJW9	MapMan:22.5.5.3.3

Description

hypothetical protein

Coordinates

chr5:-:67832274..67834564

Molecular Weight (calculated)

25006.0 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.409

Length

214 amino acids

Sequence
(BLAST)

001: MAAGRFRIGY PRVSVLVVRE LDVPGEIYER KTYAFEFATV EMPYESYNGT NVRLRYILKV TIGRNYVGSI VESRDFCVRN YSPVPTINNS IKMEVGIEDC
101: LHIEFEYSKS KIKIKNMELE IRRRESTGSG PNTYVETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT YRNINNKFSV KYYLNLVLVD EEDHRYFKQQ
201: EITMYRLLET PQSS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.