Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0801600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53530.1 | Os03t0801600-01 | AT2G17790.1 | 17889650 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G148600.1 | Wheat | cytosol, golgi, unclear | 90.46 | 90.46 |
| TraesCS4A01G164600.2 | Wheat | cytosol | 90.46 | 90.46 |
| TraesCSU01G067300.1 | Wheat | cytosol | 85.86 | 90.31 |
| HORVU4Hr1G031010.1 | Barley | cytosol | 90.13 | 90.13 |
| Os03t0679100-01 | Rice | cytosol | 17.11 | 89.66 |
| Zm00001d007296_P001 | Maize | cytosol, extracellular | 88.82 | 88.82 |
| OQU83889 | Sorghum | cytosol | 60.53 | 85.98 |
| Os12t0500700-01 | Rice | plasma membrane | 85.2 | 84.64 |
| Solyc04g050240.2.1 | Tomato | plastid | 80.26 | 81.06 |
| Bra003049.1-P | Field mustard | cytosol | 77.3 | 77.81 |
| GSMUA_Achr5P05770_001 | Banana | cytosol | 80.59 | 77.78 |
| AT5G53530.1 | Thale cress | cytosol | 76.32 | 76.82 |
| CDY72159 | Canola | cytosol | 36.51 | 75.51 |
| AT4G27690.1 | Thale cress | cytosol | 75.0 | 75.25 |
| Bra026315.1-P | Field mustard | cytosol | 74.67 | 74.92 |
| GSMUA_Achr5P23810_001 | Banana | golgi | 77.63 | 73.52 |
| VIT_06s0009g01880.t01 | Wine grape | cytosol | 78.62 | 71.99 |
| CDY28831 | Canola | cytosol | 75.33 | 71.34 |
| CDY55345 | Canola | endoplasmic reticulum | 75.0 | 70.59 |
| CDY19034 | Canola | cytosol, endoplasmic reticulum | 72.37 | 70.29 |
| Bra022659.1-P | Field mustard | cytosol | 75.66 | 67.06 |
| KRG89789 | Soybean | plastid | 36.84 | 64.37 |
| VIT_16s0098g01270.t01 | Wine grape | endoplasmic reticulum, vacuole | 78.95 | 64.0 |
| CDY14373 | Canola | cytosol, plastid | 66.78 | 58.67 |
| CDX96231 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.33 | 55.05 |
Protein Annotations
| Gene3D:2.60.40.640 | MapMan:22.5.5.3.3 | EntrezGene:4350961 | ProteinID:ABA94940.1 | EMBL:AK065196 | InterPro:Arrestin_C |
| ProteinID:BAF28675.1 | ProteinID:BAT14930.1 | ProteinID:EEE52408.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030904 | GO:GO:0042147 | InterPro:IPR014752 | EnsemblPlantsGene:Os11g0629200 |
| EnsemblPlants:Os11t0629200-01 | PFAM:PF03643 | PANTHER:PTHR12233 | PANTHER:PTHR12233:SF13 | UniProt:Q2R0X0 | UniParc:UPI0000681E1A |
| InterPro:Vps26-related | RefSeq:XP_015618019.1 | : | : | : | : |
Description
Similar to Vacuolar sorting protein-like; embryogenesis protein H beta 58-like protein. (Os11t0629200-01)
Coordinates
chr11:+:24642531..24646800
Molecular Weight (calculated)
35332.6 Da
IEP (calculated)
7.486
GRAVY (calculated)
-0.341
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYIIGAFKA PCDVFITFAD ERSRKQVAIK KDNGKTLMVP AFQSLETIAG EVSVAPVPGK RVEHQGVKIE LLGQIELYHE RGHFYDFTSL VRELEVAGEI
101: YERKTYPFEF STVEMPYESY NGTNVRLRYI LKVTIGRPYA TSVVECRDFC VRNYTPLPSI NNSIKMEVGI EDCLHIEFEY SKSKYHLKDV IVGKIYFLLV
201: RIKIKNMELE IRRRESTGSG PGTYIETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT YRNINNKFNV KYYLNLVLVD EEDRRYFKQQ EITMYRLQET
301: PQSS
101: YERKTYPFEF STVEMPYESY NGTNVRLRYI LKVTIGRPYA TSVVECRDFC VRNYTPLPSI NNSIKMEVGI EDCLHIEFEY SKSKYHLKDV IVGKIYFLLV
201: RIKIKNMELE IRRRESTGSG PGTYIETETL AKFELMDGAP VRGESIPVRL FLTPYELTPT YRNINNKFNV KYYLNLVLVD EEDRRYFKQQ EITMYRLQET
301: PQSS
001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS
Arabidopsis Description
VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.