CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20826
CDY24377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53530.1	CDY20826	AT2G17790.1	17889650
AT5G53530.1	CDY24377	AT2G17790.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72159	Canola	cytosol	34.13	96.6
AT5G53530.1	Thale cress	cytosol	68.51	94.37
CDY28831	Canola	cytosol	72.12	93.46
Bra022659.1-P	Field mustard	cytosol	72.12	87.46
KRH62711	Soybean	endoplasmic reticulum	63.46	87.42
KRH56246	Soybean	endoplasmic reticulum	63.46	87.42
Solyc04g050240.2.1	Tomato	plastid	62.98	87.04
CDY55345	Canola	endoplasmic reticulum	66.11	85.14
CDY19034	Canola	cytosol, endoplasmic reticulum	63.94	84.98
EES16015	Sorghum	cytosol	57.45	78.62
Zm00001d023738_P001	Maize	extracellular, plasma membrane	57.45	78.62
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	57.45	78.62
TraesCS4A01G164600.2	Wheat	cytosol	57.45	78.62
HORVU4Hr1G031010.1	Barley	cytosol	57.45	78.62
OQU83889	Sorghum	cytosol	40.14	78.04
Zm00001d007296_P001	Maize	cytosol, extracellular	56.97	77.96
TraesCSU01G067300.1	Wheat	cytosol	54.09	77.85
GSMUA_Achr5P05770_001	Banana	cytosol	57.45	75.87
Os11t0629200-01	Rice	cytosol, plasma membrane	55.05	75.33
Os12t0500700-01	Rice	plasma membrane	55.29	75.16
CDY14373	Canola	cytosol, plastid	62.02	74.57
GSMUA_Achr5P23810_001	Banana	golgi	56.49	73.21
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	64.42	71.47
Os03t0679100-01	Rice	cytosol	9.38	67.24

Protein Annotations

EnsemblPlants:CDX96231	EnsemblPlantsGene:GSBRNA2T00102339001	Gene3D:2.60.40.640	GO:A0A078E4J2	InterPro:Arrestin_C	InterPro:IPR014752
InterPro:Ig_E-set	InterPro:Vps26-related	PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	PFAM:PF03643	ProteinID:CDX96231
ProteinID:CDX96231.1	SEG:seg	SUPFAM:SSF81296	TMHMM:TMhelix	UniParc:UPI0004EEF1C3	MapMan:22.5.5.3.3

Description

BnaC02g14200D

Coordinates

chrLK031893:-:962024..969753

Molecular Weight (calculated)

47895.0 Da

IEP (calculated)

7.922

GRAVY (calculated)

-0.075

Length

416 amino acids

Sequence
(BLAST)

001: MFSNPTLLIS LQAFFTAFNL CFRENIFDPV RILSSQATWI SPKNLGFFFF SFCSVTLSVC LSVVFNPQTT VRIFAGLSIT CDLFTLCDWI LILVNRVIVI
101: GIESSESCFL GLKSQNYLRG AFKPACNISI TFTDGKNRKQ VPVKKDNGQM VMNPLFHSQE TIAGKVCIEP YQGKKVEHNG VKVELLGQIE MYFDRGNFYD
201: FTSLVRELDV PGEIYEKKAY PFEFPTVEMP YETYNGVNVR LRYVLKVTVT RGYAGSIVEY QDFVVRNYSP LPPINNSIKM EVGIEDCLHI EFEYNKSKYH
301: LKDVILGKVY FLLVRIKIKN MDLEIRRRES TGAGANTHVE TETLAKFELM DGAPVRGESI PVRLFLTPYD LTPTHKNINN KFSVKYYLNL VLVDEEDRRY
401: FKQQEITLYR LKDESS

Best Arabidopsis Sequence Match ( AT5G53530.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFTD GKNRKQVPTK KDNGQIVMNP LFQSQETIAG KINIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VREIDVPGEI
101: YERKTYPFEF SSVEMPYETY NGVNVRLRYV LKVTVTRGYA GSIVEYQDFV VRNYVPLPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKIKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGAP VRGESIPVRV FLTPYDLTPT HKNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKEE
301: TS

Arabidopsis Description

VPS26AVacuolar protein sorting-associated protein 26A [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.