Factsheet for GSMUA_Achr5P23810_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05770_001	Banana	cytosol	82.55	84.13
EES16015	Sorghum	cytosol	78.5	82.89
Zm00001d023738_P001	Maize	extracellular, plasma membrane	78.19	82.57
TraesCSU01G067300.1	Wheat	cytosol	73.52	81.66
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	77.26	81.58
TraesCS4A01G164600.2	Wheat	cytosol	77.26	81.58
Solyc04g050240.2.1	Tomato	plastid	76.32	81.4
Zm00001d007296_P001	Maize	cytosol, extracellular	76.95	81.25
HORVU4Hr1G031010.1	Barley	cytosol	76.64	80.92
OQU83889	Sorghum	cytosol	53.27	79.91
Os12t0500700-01	Rice	plasma membrane	75.08	78.76
Bra003049.1-P	Field mustard	cytosol	73.52	78.15
Os11t0629200-01	Rice	cytosol, plasma membrane	73.52	77.63
AT4G27690.1	Thale cress	cytosol	72.9	77.23
AT5G53530.1	Thale cress	cytosol	72.59	77.15
KRH62711	Soybean	endoplasmic reticulum	72.59	77.15
KRH56246	Soybean	endoplasmic reticulum	72.59	77.15
Bra026315.1-P	Field mustard	cytosol	72.27	76.57
CDY72159	Canola	cytosol	34.89	76.19
CDY19034	Canola	cytosol, endoplasmic reticulum	71.96	73.8
CDY55345	Canola	endoplasmic reticulum	73.83	73.37
CDY28831	Canola	cytosol	72.9	72.9
Bra022659.1-P	Field mustard	cytosol	72.59	67.93
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	77.26	66.13
Os03t0679100-01	Rice	cytosol	11.84	65.52
CDY14373	Canola	cytosol, plastid	63.55	58.96
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.21	56.49

Protein Annotations

EnsemblPlants:GSMUA_Achr5P23810_001	EnsemblPlants:GSMUA_Achr5T23810_001	EnsemblPlantsGene:GSMUA_Achr5G23810_001	Gene3D:2.60.40.640	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Ig_E-set	InterPro:Vps26-related
PANTHER:PTHR12233	PANTHER:PTHR12233:SF12	PFAM:PF03643	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF81296
TMHMM:TMhelix	UniParc:UPI0002959E7C	UniProt:M0T156	MapMan:22.5.5.3.3	:	:

Description

Vacuolar protein sorting-associated protein 26 [Source:GMGC_GENE;Acc:GSMUA_Achr5G23810_001]

Coordinates

chr5:+:25405839..25417676

Molecular Weight (calculated)

37799.0 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.271

Length

321 amino acids

Sequence
(BLAST)

001: MKILRKQLLF LFYLYLLCMF QNYIVGAFKP PCTISVIFAD GKTRKQASIK KDNGRTTMVP IFESKENIVG EVIIEPTQGK KVEHNGIKIE LLGQIELYFD
101: KGNFYDFTSL VRELDIPGDL YERKTYPFEF STVEMPYESY SGINVRLRYI LKVTISRNYI GNIVEYQEFC VRNFTPLPTI NNSIKMEVGI EDCLHIEFEY
201: SKTKYHQKDV IIGKIYFLLV RIKLKNMELE IRRRESTGSG PNTYVETETL AKYELMDGAP VRGESIPVRL FLSPYELTPT YRNINNKFSV KYYLNLVLMD
301: EEDRRYFKQQ EITIYRLLET S

Best Arabidopsis Sequence Match ( AT4G27690.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFSD GKNRKQVPMK KENGQTALVP LFHSQDTISG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS

Arabidopsis Description

VPS26BVPS26B [Source:UniProtKB/TrEMBL;Acc:A0A178UZ41]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.