CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026315.1-P	Field mustard	cytosol	92.01	95.05
AT4G27690.1	Thale cress	cytosol	90.73	93.73
CDY55345	Canola	endoplasmic reticulum	95.21	92.26
KRH62711	Soybean	endoplasmic reticulum	81.79	84.77
KRH56246	Soybean	endoplasmic reticulum	81.47	84.44
CDY72159	Canola	cytosol	39.62	84.35
Solyc04g050240.2.1	Tomato	plastid	80.51	83.72
CDY28831	Canola	cytosol	84.66	82.55
EES16015	Sorghum	cytosol	73.8	75.99
Zm00001d023738_P001	Maize	extracellular, plasma membrane	73.8	75.99
HORVU4Hr1G031010.1	Barley	cytosol	73.16	75.33
TraesCS4D01G148600.1	Wheat	cytosol, golgi, unclear	72.84	75.0
TraesCS4A01G164600.2	Wheat	cytosol	72.84	75.0
TraesCSU01G067300.1	Wheat	cytosol	69.01	74.74
Zm00001d007296_P001	Maize	cytosol, extracellular	72.52	74.67
GSMUA_Achr5P05770_001	Banana	cytosol	75.08	74.6
OQU83889	Sorghum	cytosol	50.48	73.83
Os11t0629200-01	Rice	cytosol, plasma membrane	70.29	72.37
Os12t0500700-01	Rice	plasma membrane	70.61	72.22
GSMUA_Achr5P23810_001	Banana	golgi	73.8	71.96
VIT_16s0098g01270.t01	Wine grape	endoplasmic reticulum, vacuole	82.11	68.53
CDY14373	Canola	cytosol, plastid	73.16	66.19
Os03t0679100-01	Rice	cytosol	12.14	65.52
CDX96231	Canola	endoplasmic reticulum, extracellular, plasma membrane	84.98	63.94

Protein Annotations

EnsemblPlants:CDY19034	EnsemblPlantsGene:GSBRNA2T00006293001	Gene3D:2.60.40.640	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Arrestin_C	InterPro:IPR014752	InterPro:Vps26-related	PANTHER:PTHR12233	PANTHER:PTHR12233:SF12
PFAM:PF03643	ProteinID:CDY19034	ProteinID:CDY19034.1	UniParc:UPI0004EE2297	UniProt:A0A078G0Q4	MapMan:22.5.5.3.3

Description

BnaC01g20340DBnaC01g20340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0Q4]

Coordinates

chrLK032091:-:490096..492539

Molecular Weight (calculated)

36506.0 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.390

Length

313 amino acids

Sequence
(BLAST)

001: MWALWTGLLY DLVDSTWRNY LLGAFKPACN ISITFSDGKN RKQVPMKKEN GQTALVPLFQ SQETLSGKVC IEPYQGKKVE HNGVKVELLG QIEMYFDRGN
101: FYDFTSLVRE LDVPGDIYER KTYPFEFPTV YGVNVRLRYV LKVTVTRGYA GSIFEYQEFM VRNYAPPPPI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV
201: ILGKIYFLLV RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ
301: EITLYRLKED TSS

Best Arabidopsis Sequence Match ( AT4G27690.1 )
(BLAST)

001: MNYLLGAFKP ACNISITFSD GKNRKQVPMK KENGQTALVP LFHSQDTISG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS

Arabidopsis Description

VPS26BVPS26B [Source:UniProtKB/TrEMBL;Acc:A0A178UZ41]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.