Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026315.1-P | Field mustard | cytosol | 95.71 | 95.71 |
| AT5G53530.1 | Thale cress | cytosol | 90.76 | 91.06 |
| CDY19034 | Canola | cytosol, endoplasmic reticulum | 93.73 | 90.73 |
| CDY55345 | Canola | endoplasmic reticulum | 96.37 | 90.4 |
| KRH62711 | Soybean | endoplasmic reticulum | 86.8 | 87.09 |
| KRH56246 | Soybean | endoplasmic reticulum | 86.47 | 86.75 |
| Solyc04g050240.2.1 | Tomato | plastid | 85.81 | 86.38 |
| Zm00001d023738_P001 | Maize | extracellular, plasma membrane | 78.55 | 78.29 |
| EES16015 | Sorghum | cytosol | 78.55 | 78.29 |
| HORVU4Hr1G031010.1 | Barley | cytosol | 78.22 | 77.96 |
| TraesCS4A01G164600.2 | Wheat | cytosol | 77.89 | 77.63 |
| TraesCS4D01G148600.1 | Wheat | cytosol, golgi, unclear | 77.89 | 77.63 |
| TraesCSU01G067300.1 | Wheat | cytosol | 73.6 | 77.16 |
| OQU83889 | Sorghum | cytosol | 54.46 | 77.1 |
| Zm00001d007296_P001 | Maize | cytosol, extracellular | 77.23 | 76.97 |
| GSMUA_Achr5P05770_001 | Banana | cytosol | 78.88 | 75.87 |
| Os11t0629200-01 | Rice | cytosol, plasma membrane | 75.25 | 75.0 |
| Os12t0500700-01 | Rice | plasma membrane | 75.25 | 74.51 |
| GSMUA_Achr5P23810_001 | Banana | golgi | 77.23 | 72.9 |
| VIT_16s0098g01270.t01 | Wine grape | endoplasmic reticulum, vacuole | 87.13 | 70.4 |
| Os03t0679100-01 | Rice | cytosol | 12.21 | 63.79 |
Protein Annotations
| Gene3D:2.60.40.640 | MapMan:22.5.5.3.3 | EntrezGene:828883 | UniProt:A0A178UZ41 | ProteinID:AEE85381.1 | ArrayExpress:AT4G27690 |
| EnsemblPlantsGene:AT4G27690 | RefSeq:AT4G27690 | TAIR:AT4G27690 | RefSeq:AT4G27690-TAIR-G | EnsemblPlants:AT4G27690.1 | TAIR:AT4G27690.1 |
| EMBL:AY094409 | EMBL:AY122891 | InterPro:Arrestin_C | Unigene:At.32074 | ProteinID:CAB38281.1 | ProteinID:CAB81419.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009987 | GO:GO:0010008 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0030904 | GO:GO:0031902 | GO:GO:0042147 | InterPro:IPR014752 | InterPro:Ig_E-set |
| RefSeq:NP_194499.2 | ProteinID:OAO98122.1 | PFAM:PF03643 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12233 | PANTHER:PTHR12233:SF12 | UniProt:Q9T091 |
| SUPFAM:SSF81296 | UniParc:UPI0000138BC0 | Symbol:VPS26B | InterPro:Vps26-related | : | : |
Description
VPS26BVPS26B [Source:UniProtKB/TrEMBL;Acc:A0A178UZ41]
Coordinates
chr4:+:13823510..13826395
Molecular Weight (calculated)
35206.4 Da
IEP (calculated)
7.575
GRAVY (calculated)
-0.417
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYLLGAFKP ACNISITFSD GKNRKQVPMK KENGQTALVP LFHSQDTISG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.