Factsheet for Zm00001d034492_P006

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003399_P001
Zm00001d007296_P001
Zm00001d013430_P001
Zm00001d020403_P001
Zm00001d023738_P001
Zm00001d032244_P001
Zm00001d033745_P001
Zm00001d048053_P001
Zm00001d048054_P002
Zm00001d050355_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	Zm00001d007296_P001	AT5G53530.1	17889650
AT2G17790.1	Zm00001d023738_P001	AT5G53530.1	17889650
AT3G51310.1	Zm00001d003399_P001	AT3G17840.1	15618630
AT3G51310.1	Zm00001d013430_P001	AT3G17840.1	15618630
AT3G51310.1	Zm00001d020403_P001	AT3G17840.1	15618630
AT3G51310.1	Zm00001d032244_P001	AT3G17840.1	15618630
AT3G51310.1	Zm00001d033745_P001	AT3G17840.1	15618630
AT3G51310.1	Zm00001d048053_P001	AT3G17840.1	15618630
AT3G51310.1	Zm00001d048054_P002	AT3G17840.1	15618630
AT3G51310.1	Zm00001d050355_P001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93269	Sorghum	cytosol	96.87	84.68
TraesCS5A01G448400.1	Wheat	golgi	92.73	82.09
HORVU5Hr1G107250.1	Barley	cytosol	92.73	82.09
TraesCS5D01G455000.1	Wheat	cytosol	92.59	81.97
Zm00001d013059_P003	Maize	cytosol	96.15	81.92
CDY13527	Canola	mitochondrion	72.22	76.93
Os03t0801600-01	Rice	cytosol	93.59	76.31
GSMUA_Achr9P11120_001	Banana	cytosol	85.19	75.79
TraesCS5B01G453000.1	Wheat	cytosol	92.59	73.61
VIT_18s0001g14680.t01	Wine grape	cytosol	82.19	73.04
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	80.91	71.81
GSMUA_Achr4P17490_001	Banana	cytosol	80.77	71.68
KRH76626	Soybean	endoplasmic reticulum	80.91	71.54
PGSC0003DMT400075420	Potato	cytosol	80.48	71.43
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	80.77	71.41
KRH05971	Soybean	cytosol	79.77	70.18
KRH17452	Soybean	endoplasmic reticulum	79.34	69.89
Solyc03g033400.2.1	Tomato	cytosol, nucleus	78.49	69.75
PGSC0003DMT400058024	Potato	cytosol	78.35	69.62
CDX87655	Canola	cytosol	78.06	69.19
Solyc02g083560.2.1	Tomato	cytosol	77.64	68.99
AT1G75850.1	Thale cress	cytosol	77.49	68.86
PGSC0003DMT400009386	Potato	cytosol	77.35	68.73
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	80.91	68.11
Bra015806.1-P	Field mustard	cytosol	78.06	67.91
KRH15953	Soybean	cytosol	6.84	67.61
CDX73208	Canola	cytosol	67.66	66.53
CDX73207	Canola	cytosol	8.55	65.93
Bra002092.1-P	Field mustard	cytosol	72.08	64.21
CDY24377	Canola	cytosol	72.08	64.21
CDY20826	Canola	cytosol	71.79	63.96
KRH37553	Soybean	cytosol	10.54	63.79
AT2G17790.1	Thale cress	cytosol	71.37	63.66
CDX73731	Canola	cytosol	68.52	60.89
CDX77995	Canola	cytosol	68.09	60.51
Bra036818.1-P	Field mustard	cytosol	68.09	60.28
AT3G51310.1	Thale cress	cytosol	67.52	60.0
CDY59615	Canola	cytosol	67.66	59.6
CDY39067	Canola	endoplasmic reticulum, golgi	23.22	55.44
CDY13526	Canola	cytosol	1.0	5.83

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	UniProt:A0A1D6L800	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0030904
GO:GO:0030906	GO:GO:0042147	ProteinID:ONM10386.1	PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099
PANTHER:PTHR11099:SF1	SUPFAM:SSF48371	SignalP:SignalP-noTM	UniParc:UPI0008455783	InterPro:Vps35	EnsemblPlantsGene:Zm00001d034492
EnsemblPlants:Zm00001d034492_P006	EnsemblPlants:Zm00001d034492_T006	SEG:seg	:	:	:

Description

Vacuolar protein sorting 35

Coordinates

chr1:+:294590945..294613858

Molecular Weight (calculated)

79202.7 Da

IEP (calculated)

5.038

GRAVY (calculated)

-0.117

Length

702 amino acids

Sequence
(BLAST)

001: MIYENIHLIW CLHASYLLCT VGSVYIKSKE APAKDVLKDL VEMCRGIQHP LRGLFLRSYL SQISRDKLPD IGSEYEGDAE TINDAVEFVL QNFIEMNKLW
101: VRMQHLGPAR EKEKRGKERN ELRDLVGKNL HVLSQIEGVD LDMYKETVLP RILEQVVNCK DDLAQFYLMD CIIQVFPDEY HLQTLETLLN AFPQLQPSVD
201: IKTVLSQLMD RLSNYAASSP EVLPEFLQVE AFAKFSNAIG KVIEAQPDMP VVGAVTLYVS LLTFTLRVHP DRLDYVDQVL GACVKKLSGK AKLEDSRATK
301: QIVALLSAPL EKYSNIVTAL ELSNYPRVMD YLDNATTKVM AVVIIQSIMK NTTCISTSDK IEALFDLIKG LIKDMDGAQD DELDEEDFKE EQNSVARLIH
401: MLHNDEPEEM LKILCTVQKH ILQGGPKRLT FTVPSLVFSA LKLVRRLQSQ DGDVTGEDVP ATPKKIFQIL HQTIDALSCV PSPELALRLY LHCAEAANDC
501: DLEPVAYEFF TQAFILYEEE IADSKAQITA IHLIIGTLQR MNIFGVENRD TLTHKTTGYS AKLLKKPDQC RAVYACSHLF WADDQDGIMD GERVLLCLKR
601: ALRIANAAQQ MASATRGSSG SVTLFIEILN KYLYFFEKGI PQITNTVIQD LIELIRTEKQ SDNSVADPST EAFFSSTLRY IEFQKQKGGS IGEKYEQIKT
701: SS

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.