CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15953	Soybean	cytosol	27.59	45.07
KRH05971	Soybean	cytosol	81.9	11.9
KRH17452	Soybean	endoplasmic reticulum	80.17	11.67
CDY13527	Canola	mitochondrion	62.93	11.08
CDX73208	Canola	cytosol	65.52	10.64
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	63.79	10.54
VIT_18s0001g14680.t01	Wine grape	cytosol	66.38	9.75
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	65.52	9.61
CDX87655	Canola	cytosol	65.52	9.6
Bra015806.1-P	Field mustard	cytosol	65.52	9.42
PGSC0003DMT400075420	Potato	cytosol	63.79	9.36
EER93269	Sorghum	cytosol	63.79	9.22
TraesCS5D01G455000.1	Wheat	cytosol	62.93	9.21
TraesCS5A01G448400.1	Wheat	golgi	62.93	9.21
AT1G75850.1	Thale cress	cytosol	62.07	9.11
Zm00001d013059_P003	Maize	cytosol	63.79	8.98
KRH76626	Soybean	endoplasmic reticulum	61.21	8.94
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	61.21	8.94
Os03t0801600-01	Rice	cytosol	62.93	8.48
TraesCS5B01G453000.1	Wheat	cytosol	62.93	8.27
GSMUA_Achr5P27230_001	Banana	cytosol	6.03	5.6
CDY13526	Canola	cytosol	0.86	0.83
CDY39067	Canola	endoplasmic reticulum, golgi	0.86	0.34
CDX73207	Canola	cytosol	0.0	0.0
GSMUA_Achr3P01920_001	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:22.5.5.3.1	EMBL:ACUP02005469	EnsemblPlantsGene:GLYMA_09G073500	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005829
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	UniProt:K7LCB1	EnsemblPlants:KRH37553	ProteinID:KRH37553
ProteinID:KRH37553.1	PFAM:PF03635	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI00029630E2	InterPro:Vps35

Description

hypothetical protein

Coordinates

chr9:+:7756639..7757970

Molecular Weight (calculated)

13275.1 Da

IEP (calculated)

4.149

GRAVY (calculated)

-0.030

Length

116 amino acids

Sequence
(BLAST)

001: MYHLDHEANK VMAMVIIQSI TKNNTCISTF DKVAVLFELI KGLIMDLDGT TLDDVDEEDF NEEQNCVARL IRMLHNDEPE EMFKITIIMF ILIRQLQGQD
101: GNIVGEEAPT TPKTIF

Best Arabidopsis Sequence Match ( AT1G75850.2 )
(BLAST)

001: MYKETVLPRV LEQVVNCKDK LAQYYLMECI IQVFPDEYHL QTLETLLAAC TQLMPTVDTK IVLTQLMDRL SNYAASSPDV LHEFLQVEAF AKLSNAIGKV
101: IDTQLEMPIV GAMTLFVSLL TFTLRVHPDR LDYVDQVLGA CVVKLSSVPK LEDARAMKQV VALLSAPLEK YSDIVTALTL SNYPRVMDHL DDGTNKVMAM
201: LIIQSIMKTD SCISTADKVE VLFELIKGLI KDLDETNAEE LDEEDFQEEQ NSVARLIHML DNEEPEEMLK IICVVRRHLM TGGPRRLPFT VPPLVFSAVR
301: LVRQLESQGG DIAGEDSATP RKIFQILNQT IEVLTSVPCP ELALRLYLQC AEAASDCDLE PVAYEFFTQA FMLYEEEIAD SKAQVTAIHL IVGTLQRINV
401: FGVENRDTLT HKATGYSARL LKKPDQCRAV YACSHLFWVD DPDGIKDGER VLLCLRRALR IANAAQQMAS ATRGSSGPVT LFVEILNKYI YFFEKGNPHI
501: TPSDIQSLIE LINNEMQSDN GNTTIHSDPF FTSTLRYIKF IKQKGGLMGE KYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.