Factsheet for GSMUA_Achr5P27230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01920_001	Banana	cytosol	21.6	32.53
CDY13526	Canola	cytosol	15.2	15.83
KRH37553	Soybean	cytosol	5.6	6.03
CDX73208	Canola	cytosol	33.6	5.88
GSMUA_Achr9P11120_001	Banana	cytosol	36.8	5.83
KRH17452	Soybean	endoplasmic reticulum	36.8	5.77
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	36.0	5.69
PGSC0003DMT400075420	Potato	cytosol	36.0	5.69
KRH05971	Soybean	cytosol	36.0	5.64
CDX87655	Canola	cytosol	35.2	5.56
Bra015806.1-P	Field mustard	cytosol	35.2	5.45
AT1G75850.1	Thale cress	cytosol	34.4	5.44
VIT_18s0001g14680.t01	Wine grape	cytosol	34.4	5.44
GSMUA_Achr4P17490_001	Banana	cytosol	30.4	4.8
CDY39067	Canola	endoplasmic reticulum, golgi	8.0	3.4
CDY13527	Canola	mitochondrion	17.6	3.34
CDX73207	Canola	cytosol	0.8	1.1

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	EnsemblPlantsGene:GSMUA_Achr5G27230_001	EnsemblPlants:GSMUA_Achr5P27230_001
EnsemblPlants:GSMUA_Achr5T27230_001	UniProt:M0T248	PFAM:PF03635	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI000296D1A0
InterPro:Vps35	SEG:seg	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G27230_001]

Coordinates

chr5:+:27778173..27779808

Molecular Weight (calculated)

14757.9 Da

IEP (calculated)

7.796

GRAVY (calculated)

0.042

Length

125 amino acids

Sequence
(BLAST)

001: MLPHGDDVEK WLSEGIVGIQ HSVFYMHPAL ATSPSRCGKY IYIYIYIYFS VYRSVYSIVP YRANDSNDLK DALRYSVQML SELRTSLLSP HKYYKLCELR
101: YLFDLACSEC CLRRSWILMC FFFGD

Best Arabidopsis Sequence Match ( AT3G51310.1 )
(BLAST)

001: MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE

Arabidopsis Description

VPS35CVacuolar protein sorting-associated protein 35C [Source:UniProtKB/Swiss-Prot;Acc:A8R7K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.