Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX87655 | Canola | cytosol | 98.02 | 99.87 |
AT1G75850.1 | Thale cress | cytosol | 92.81 | 94.81 |
VIT_18s0001g14680.t01 | Wine grape | cytosol | 80.55 | 82.28 |
KRH05971 | Soybean | cytosol | 80.55 | 81.45 |
KRH17452 | Soybean | endoplasmic reticulum | 80.3 | 81.3 |
Solyc12g089340.1.1 | Tomato | cytosol, nucleus, plastid | 78.69 | 80.28 |
PGSC0003DMT400075420 | Potato | cytosol | 78.19 | 79.77 |
Zm00001d034492_P006 | Maize | endoplasmic reticulum, extracellular | 67.91 | 78.06 |
EER93269 | Sorghum | cytosol | 76.08 | 76.46 |
TraesCS5D01G455000.1 | Wheat | cytosol | 74.97 | 76.29 |
TraesCS5A01G448400.1 | Wheat | golgi | 74.97 | 76.29 |
Zm00001d013059_P003 | Maize | cytosol | 75.71 | 74.15 |
Os03t0801600-01 | Rice | cytosol | 75.96 | 71.2 |
Bra002092.1-P | Field mustard | cytosol | 67.41 | 69.04 |
TraesCS5B01G453000.1 | Wheat | cytosol | 74.85 | 68.4 |
KRH37553 | Soybean | cytosol | 9.42 | 65.52 |
Bra036818.1-P | Field mustard | cytosol | 64.31 | 65.45 |
GSMUA_Achr3P01920_001 | Banana | cytosol | 4.58 | 44.58 |
GSMUA_Achr5P27230_001 | Banana | cytosol | 5.45 | 35.2 |
Protein Annotations
Gene3D:1.25.40.660 | MapMan:22.5.5.3.1 | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra015806 | EnsemblPlants:Bra015806.1 | EnsemblPlants:Bra015806.1-P |
GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 |
GO:GO:0016020 | GO:GO:0030904 | GO:GO:0030906 | GO:GO:0042147 | UniProt:M4DH29 | PFAM:PF03635 |
PIRSF:PIRSF009375 | PANTHER:PTHR11099 | PANTHER:PTHR11099:SF1 | SUPFAM:SSF48371 | UniParc:UPI0002541FEE | InterPro:Vps35 |
SEG:seg | : | : | : | : | : |
Description
AT1G75850 (E=6e-248) VPS35B | VPS35B (VPS35 HOMOLOG B)
Coordinates
chrA07:-:20765277..20771517
Molecular Weight (calculated)
91346.7 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.100
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRLAGVEDE EKWLAEGIAG IQHTAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD ELRQLEVFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSEYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDELAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMVGG LSDLSVLPLT
301: ILPTVDTKIV LTQLMDRLSN YAASSPDVLH EFLQVEAFAK LSNAIGKVID TQIEMPIVGA MTLFVSLLTF TLRVHPDRLD YVDQILGACV VKLSSVPKLE
401: DARAMKQVVA LLSAPLEKYN DIVTALTLSN YPRVMDHLDD GTNKVMAMLI IQSIMKNNSC ISTADKVEVL FELIKGLIKD LDGTDTEELD EEDFQEEQNS
501: VARLIHMLDN EEPEEMLKII CVVRKHLMTG GTRRLPFTVP PLVFSALRLV RQLDSQGGDI TGEEVSATPR KIFQILNQTI EVLSSVPCPE LALRLYLQCA
601: EAASDCDLEP AAYEFFTQAF ILYEEEIADS KAQVTAIHLI IGTLQRINVF GVENRDTLTH KATGYSARLL KKPDQCRAVY ACSHLFWVDD IDGIKDGERA
701: LLCLRRALRI ANAAQQMSNA TRGSSGPVTL FVEILNKYIY FYEKGNPHIT PSDIQSLIEL INTEMQSDDN GNRRTHSDPF FTSTLRYIRF QKQKGGLIGD
801: KYDLIKL
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSEYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDELAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMVGG LSDLSVLPLT
301: ILPTVDTKIV LTQLMDRLSN YAASSPDVLH EFLQVEAFAK LSNAIGKVID TQIEMPIVGA MTLFVSLLTF TLRVHPDRLD YVDQILGACV VKLSSVPKLE
401: DARAMKQVVA LLSAPLEKYN DIVTALTLSN YPRVMDHLDD GTNKVMAMLI IQSIMKNNSC ISTADKVEVL FELIKGLIKD LDGTDTEELD EEDFQEEQNS
501: VARLIHMLDN EEPEEMLKII CVVRKHLMTG GTRRLPFTVP PLVFSALRLV RQLDSQGGDI TGEEVSATPR KIFQILNQTI EVLSSVPCPE LALRLYLQCA
601: EAASDCDLEP AAYEFFTQAF ILYEEEIADS KAQVTAIHLI IGTLQRINVF GVENRDTLTH KATGYSARLL KKPDQCRAVY ACSHLFWVDD IDGIKDGERA
701: LLCLRRALRI ANAAQQMSNA TRGSSGPVTL FVEILNKYIY FYEKGNPHIT PSDIQSLIEL INTEMQSDDN GNRRTHSDPF FTSTLRYIRF QKQKGGLIGD
801: KYDLIKL
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
Arabidopsis Description
VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.