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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87655 Canola cytosol 98.02 99.87
AT1G75850.1 Thale cress cytosol 92.81 94.81
VIT_18s0001g14680.t01 Wine grape cytosol 80.55 82.28
KRH05971 Soybean cytosol 80.55 81.45
KRH17452 Soybean endoplasmic reticulum 80.3 81.3
Solyc12g089340.1.1 Tomato cytosol, nucleus, plastid 78.69 80.28
PGSC0003DMT400075420 Potato cytosol 78.19 79.77
Zm00001d034492_P006 Maize endoplasmic reticulum, extracellular 67.91 78.06
EER93269 Sorghum cytosol 76.08 76.46
TraesCS5D01G455000.1 Wheat cytosol 74.97 76.29
TraesCS5A01G448400.1 Wheat golgi 74.97 76.29
Zm00001d013059_P003 Maize cytosol 75.71 74.15
Os03t0801600-01 Rice cytosol 75.96 71.2
Bra002092.1-P Field mustard cytosol 67.41 69.04
TraesCS5B01G453000.1 Wheat cytosol 74.85 68.4
KRH37553 Soybean cytosol 9.42 65.52
Bra036818.1-P Field mustard cytosol 64.31 65.45
GSMUA_Achr3P01920_001 Banana cytosol 4.58 44.58
GSMUA_Achr5P27230_001 Banana cytosol 5.45 35.2
Protein Annotations
Gene3D:1.25.40.660MapMan:22.5.5.3.1InterPro:ARM-type_foldEnsemblPlantsGene:Bra015806EnsemblPlants:Bra015806.1EnsemblPlants:Bra015806.1-P
GO:GO:0003674GO:GO:0005215GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0006810GO:GO:0008150GO:GO:0008565GO:GO:0015031
GO:GO:0016020GO:GO:0030904GO:GO:0030906GO:GO:0042147UniProt:M4DH29PFAM:PF03635
PIRSF:PIRSF009375PANTHER:PTHR11099PANTHER:PTHR11099:SF1SUPFAM:SSF48371UniParc:UPI0002541FEEInterPro:Vps35
SEG:seg:::::
Description
AT1G75850 (E=6e-248) VPS35B | VPS35B (VPS35 HOMOLOG B)
Coordinates
chrA07:-:20765277..20771517
Molecular Weight (calculated)
91346.7 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.100
Length
807 amino acids
Sequence
(BLAST)
001: MRRLAGVEDE EKWLAEGIAG IQHTAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD ELRQLEVFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSEYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDELAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMVGG LSDLSVLPLT
301: ILPTVDTKIV LTQLMDRLSN YAASSPDVLH EFLQVEAFAK LSNAIGKVID TQIEMPIVGA MTLFVSLLTF TLRVHPDRLD YVDQILGACV VKLSSVPKLE
401: DARAMKQVVA LLSAPLEKYN DIVTALTLSN YPRVMDHLDD GTNKVMAMLI IQSIMKNNSC ISTADKVEVL FELIKGLIKD LDGTDTEELD EEDFQEEQNS
501: VARLIHMLDN EEPEEMLKII CVVRKHLMTG GTRRLPFTVP PLVFSALRLV RQLDSQGGDI TGEEVSATPR KIFQILNQTI EVLSSVPCPE LALRLYLQCA
601: EAASDCDLEP AAYEFFTQAF ILYEEEIADS KAQVTAIHLI IGTLQRINVF GVENRDTLTH KATGYSARLL KKPDQCRAVY ACSHLFWVDD IDGIKDGERA
701: LLCLRRALRI ANAAQQMSNA TRGSSGPVTL FVEILNKYIY FYEKGNPHIT PSDIQSLIEL INTEMQSDDN GNRRTHSDPF FTSTLRYIRF QKQKGGLIGD
801: KYDLIKL
Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
Arabidopsis Description
VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.