Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87655 | Canola | cytosol | 94.94 | 94.7 |
| Bra015806.1-P | Field mustard | cytosol | 94.81 | 92.81 |
| CDY13527 | Canola | mitochondrion | 77.22 | 92.56 |
| CDX73208 | Canola | cytosol | 83.16 | 92.02 |
| CDX73207 | Canola | cytosol | 9.87 | 85.71 |
| CDY13526 | Canola | cytosol | 12.78 | 84.17 |
| VIT_18s0001g14680.t01 | Wine grape | cytosol | 82.03 | 82.03 |
| KRH05971 | Soybean | cytosol | 81.39 | 80.58 |
| KRH17452 | Soybean | endoplasmic reticulum | 81.14 | 80.43 |
| Solyc12g089340.1.1 | Tomato | cytosol, nucleus, plastid | 79.37 | 79.27 |
| PGSC0003DMT400075420 | Potato | cytosol | 78.99 | 78.89 |
| Zm00001d034492_P006 | Maize | endoplasmic reticulum, extracellular | 68.86 | 77.49 |
| EER93269 | Sorghum | cytosol | 77.09 | 75.84 |
| TraesCS5A01G448400.1 | Wheat | golgi | 75.57 | 75.28 |
| TraesCS5D01G455000.1 | Wheat | cytosol | 75.57 | 75.28 |
| Zm00001d013059_P003 | Maize | cytosol | 76.71 | 73.54 |
| Os03t0801600-01 | Rice | cytosol | 76.46 | 70.15 |
| AT2G17790.1 | Thale cress | cytosol | 67.59 | 67.85 |
| TraesCS5B01G453000.1 | Wheat | cytosol | 75.57 | 67.61 |
| CDY39067 | Canola | endoplasmic reticulum, golgi | 25.06 | 67.35 |
| AT3G51310.1 | Thale cress | cytosol | 64.56 | 64.56 |
| KRH37553 | Soybean | cytosol | 9.11 | 62.07 |
| GSMUA_Achr3P01920_001 | Banana | cytosol | 4.68 | 44.58 |
| GSMUA_Achr5P27230_001 | Banana | cytosol | 5.44 | 34.4 |
Protein Annotations
| Gene3D:1.25.40.660 | MapMan:22.5.5.3.1 | EntrezGene:843918 | UniProt:A0A178WDK6 | ProteinID:AAF26771.2 | ProteinID:AEE35765.1 |
| EMBL:AK228153 | InterPro:ARM-type_fold | ArrayExpress:AT1G75850 | EnsemblPlantsGene:AT1G75850 | RefSeq:AT1G75850 | TAIR:AT1G75850 |
| RefSeq:AT1G75850-TAIR-G | EnsemblPlants:AT1G75850.1 | TAIR:AT1G75850.1 | Unigene:At.49319 | ncoils:Coil | UniProt:F4I0P8 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005770 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0030904 | GO:GO:0030906 | GO:GO:0031902 | GO:GO:0042147 | RefSeq:NP_177713.3 | ProteinID:OAP15871.1 |
| PFAM:PF03635 | PIRSF:PIRSF009375 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11099 | PANTHER:PTHR11099:SF1 |
| SUPFAM:SSF48371 | UniParc:UPI00015057B6 | Symbol:VPS35B | InterPro:Vps35 | SEG:seg | : |
Description
VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
Coordinates
chr1:-:28477768..28483946
Molecular Weight (calculated)
89450.5 Da
IEP (calculated)
5.086
GRAVY (calculated)
-0.106
Length
790 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.