Factsheet for GSMUA_Achr3P01920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13526	Canola	cytosol	45.78	31.67
GSMUA_Achr5P27230_001	Banana	cytosol	32.53	21.6
GSMUA_Achr9P11120_001	Banana	cytosol	60.24	6.34
KRH17452	Soybean	endoplasmic reticulum	53.01	5.52
KRH05971	Soybean	cytosol	51.81	5.39
CDX73208	Canola	cytosol	45.78	5.32
GSMUA_Achr4P17490_001	Banana	cytosol	50.6	5.31
VIT_18s0001g14680.t01	Wine grape	cytosol	48.19	5.06
PGSC0003DMT400075420	Potato	cytosol	46.99	4.93
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	46.99	4.93
CDX87655	Canola	cytosol	45.78	4.8
AT1G75850.1	Thale cress	cytosol	44.58	4.68
Bra015806.1-P	Field mustard	cytosol	44.58	4.58
CDY39067	Canola	endoplasmic reticulum, golgi	4.82	1.36
CDY13527	Canola	mitochondrion	0.0	0.0
CDX73207	Canola	cytosol	0.0	0.0
KRH37553	Soybean	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	EnsemblPlantsGene:GSMUA_Achr3G01920_001	EnsemblPlants:GSMUA_Achr3P01920_001
EnsemblPlants:GSMUA_Achr3T01920_001	UniProt:M0SB10	PFAM:PF03635	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI00029614DD
InterPro:Vps35	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G01920_001]

Coordinates

chr3:+:1287585..1287944

Molecular Weight (calculated)

9647.5 Da

IEP (calculated)

4.548

GRAVY (calculated)

-0.072

Length

83 amino acids

Sequence
(BLAST)

1: MLPHGYDEEK WLAEGIVSIQ HNAFYMHGAL DSNDLKDALR YSVQMLSELR TSLLSPHKYY ELRDWDVYLI LLVVNAACVE AEF

Best Arabidopsis Sequence Match ( AT2G17790.1 )
(BLAST)

001: MIADGSEDEE KWLAAGAAAF KQNAFYMQRA IDSNNLKDAL KYSAQMLSEL RTSKLSPHKY YDLYMRAFDE LRKLEIFFME ETRRGCSVIE LYELVQHAGN
101: ILPRLYLLCT AGSVYIKTKE APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL LNFTEMNKLW VRMQHQGPAR
201: EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME
301: RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL
401: EKYNDVVTAL KLTNYPLVVE YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE EQNSVALLIH MLYNDDPEEM
501: FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF
601: TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ
701: VANTARGSTG SVTLFIEILN KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE RYQAIKV

Arabidopsis Description

VPS35AVacuolar protein sorting-associated protein 35A [Source:UniProtKB/Swiss-Prot;Acc:Q7X659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.