CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05971	Soybean	cytosol	97.62	97.49
VIT_18s0001g14680.t01	Wine grape	cytosol	84.69	85.44
CDX87655	Canola	cytosol	81.43	81.94
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	81.18	81.8
PGSC0003DMT400075420	Potato	cytosol	81.05	81.67
AT1G75850.1	Thale cress	cytosol	80.43	81.14
Bra015806.1-P	Field mustard	cytosol	81.3	80.3
KRH37553	Soybean	cytosol	11.67	80.17
CDX73208	Canola	cytosol	71.52	79.83
CDY13527	Canola	mitochondrion	65.62	79.36
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	69.89	79.34
EER93269	Sorghum	cytosol	79.55	78.95
TraesCS5A01G448400.1	Wheat	golgi	78.54	78.94
TraesCS5D01G455000.1	Wheat	cytosol	78.54	78.94
KRH76626	Soybean	endoplasmic reticulum	77.92	78.21
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	77.79	78.09
Zm00001d013059_P003	Maize	cytosol	79.05	76.46
Os03t0801600-01	Rice	cytosol	79.42	73.52
CDX73207	Canola	cytosol	8.28	72.53
CDY13526	Canola	cytosol	10.79	71.67
TraesCS5B01G453000.1	Wheat	cytosol	78.42	70.78
KRH15953	Soybean	cytosol	5.65	63.38
CDY39067	Canola	endoplasmic reticulum, golgi	22.46	60.88
GSMUA_Achr3P01920_001	Banana	cytosol	5.52	53.01
GSMUA_Achr5P27230_001	Banana	cytosol	5.77	36.8

Protein Annotations

Gene3D:1.25.40.660	EntrezGene:100778365	MapMan:22.5.5.3.1	EMBL:ACUP02009091	EnsemblPlantsGene:GLYMA_14G220300	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005770	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	UniProt:I1MC26
EnsemblPlants:KRH17452	ProteinID:KRH17452	ProteinID:KRH17452.1	PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099
PANTHER:PTHR11099:SF1	UniParc:UPI000233B9C4	InterPro:Vps35	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:48529968..48538718

Molecular Weight (calculated)

90233.1 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.114

Length

797 amino acids

Sequence
(BLAST)

001: MLAQGFEDEE KWLAEGIAGI QHNAFFMHRA LDDNNLRDAL KYSAQMLSEL RTSRLSPHKY YQLYMRAFDE LRRLEIFFKD ESRHGVSIVD LYELVQHAGN
101: ILPRLYLLCT VGSVYLRCKD APVKDVLKDL VEMCRAVQHP IRGLFLRSYL SQVSKDKLPD IGYEYEEGES NSVMDAVEFV LQNFTEMNKL WVRLQLQHQG
201: PAQIREKREK ERNELRDLVG KNLHVLSQIE GVDLEMYKDT VLPSVLEQVV NCKDELAQFY LMECIIQVFP DEYHLQTLET LLGACPQLQP TVDIKTVLSQ
301: LMDRLSNYAA SSTEVLPEFL QVEAFTKLST AIGRVIEAQV DMPIVGAIAL HVSLLTFTLR VHPDRLDYVD QVLGSCVKKL YGKPKLDDNR ATKQVVALLS
401: APLDKYNDIV TALTLSNYPR VMDHLDHETN KVMAMVIIQS IMKNNTCICT ADKVEVLFEL IKGLIMDLDG TTVDEVDEED FNEEQNSVAR LIHMFHNDES
501: EEMFKIICTV TKHIMSGGPR RLPFTVPSLI FSALRLIRQL QGQDGDIVGE EVPTTPKKIF QLLNEVIEAL SSVSSPELAL KLYLQCAEAA NDCDLEPVAY
601: EFFTQAFVLY EEEIADSKAQ VTAIHLIIGS LQRMNIFGVE NRDTLTHKAT GYSAKLLKKP DQCRAVYACS HLFWVDDQDG IKDGERVLLC LKRALRIANA
701: AQQMANAARG SSGPVTLFVE ILNKYIYYFE KGNPQITSST IQGLIELIMT EMQSDSASAL PASDAFFTGT LRYIQFQKQK GGMLGEKYDP IKVSIPA

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.