Factsheet for VIT_18s0001g14680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	86.46	86.35
PGSC0003DMT400075420	Potato	cytosol	86.08	85.97
KRH05971	Soybean	cytosol	86.2	85.34
KRH17452	Soybean	endoplasmic reticulum	85.44	84.69
TraesCS5D01G455000.1	Wheat	cytosol	82.66	82.35
TraesCS5A01G448400.1	Wheat	golgi	82.66	82.35
CDX87655	Canola	cytosol	82.41	82.2
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	73.04	82.19
AT1G75850.1	Thale cress	cytosol	82.03	82.03
EER93269	Sorghum	cytosol	82.91	81.57
CDX73208	Canola	cytosol	73.16	80.95
Bra015806.1-P	Field mustard	cytosol	82.28	80.55
CDY13527	Canola	mitochondrion	67.09	80.42
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	84.81	80.34
Zm00001d013059_P003	Maize	cytosol	82.28	78.88
Os03t0801600-01	Rice	cytosol	83.29	76.42
TraesCS5B01G453000.1	Wheat	cytosol	82.53	73.84
CDY13526	Canola	cytosol	10.38	68.33
KRH37553	Soybean	cytosol	9.75	66.38
CDX73207	Canola	cytosol	7.47	64.84
CDY39067	Canola	endoplasmic reticulum, golgi	21.65	58.16
GSMUA_Achr3P01920_001	Banana	cytosol	5.06	48.19
GSMUA_Achr5P27230_001	Banana	cytosol	5.44	34.4

Protein Annotations

Gene3D:1.25.40.660	EntrezGene:100243826	wikigene:100243826	MapMan:22.5.5.3.1	ProteinID:CCB46055	ProteinID:CCB46055.1
UniProt:F6H1M7	EMBL:FN595227	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0030904
GO:GO:0030906	GO:GO:0042147	EntrezGene:LOC100243826	wikigene:LOC100243826	PFAM:PF03635	PIRSF:PIRSF009375
PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI00015C74C7	ArrayExpress:VIT_18s0001g14680	EnsemblPlantsGene:VIT_18s0001g14680	EnsemblPlants:VIT_18s0001g14680.t01
InterPro:Vps35	unigene:Vvi.18177	RefSeq:XP_002272227	RefSeq:XP_002272227.1	RefSeq:XP_002272268	RefSeq:XP_002272268.1
SEG:seg	:	:	:	:	:

Description

Vacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:F6H1M7]

Coordinates

chr18:-:12725219..12753021

Molecular Weight (calculated)

89254.9 Da

IEP (calculated)

5.093

GRAVY (calculated)

-0.152

Length

790 amino acids

Sequence
(BLAST)

001: MISNIAEDED KWLAEGIAGI QHNAFYMHRS VDSNNLREVL KYSAQMLSEL RTSRLSPHKY YELYMRAFDE LRKLEIFFKD ESRHGCSIID LYELVQHAGN
101: ILPRLYLLCT VGSVYIKSKE APPKDVLKDL VEMCRGIQHP IRGLFLRSYL SQVSRDKLPD IGSDYEGDAD TVMDAVEFVL QNFTEMNKLW VRMQHQGPGR
201: AKEKQEKERS ELRDLVGKNL HVLSQIEGID LEMYKDTVLP RVLEQVVNCK DELAQYYLMD CIIQVFPDEY HLQTLETLLG ACPQLQPTVD IKTVLSQLME
301: RLSNYAASSA EVLPDFLQVE AFAKLSSAIG KVIEAQVDMP VFGAITLYVS LLTFTLRVHP DRLDYVDQVL GACVKKLSGK PKLEDSKATK QIVALLSAPL
401: EKYNDIVTAL TLSNYPRVMD HLDNGTNKIM AMVIIQSIMK NSTCISTADK VEALFELIKG LIKDLDGFPV DELDEEDFKD EQNSVARLIH MFYNDDPEEM
501: LKIICTVKKH IMTGGLRRLP FTVPPLIFSA LRLVRRLQGQ EGDVVGEEEP ATPKKIFQLL NQTIEALSSV PSPELALRLY LQCAEAANDC DLEPVAYEFF
601: TQAFILYEEE IADSKAQVTA IHLIIGTLQR MNVFGVENRD TLTHKATGYS AKLLKKPDQC RAVYACSHLF WVDDQDGIKD GERVMLCLKR ALRIANAAQQ
701: MATVARGSSG PVILFVEILN KYIYFFEKGN SQVTSSAIQG LIELITSEMQ SESTTPDPPS DAFFASTMRY IQFQKQKGGA MGEKYDSIKA

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.