Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93269 | Sorghum | cytosol | 95.63 | 98.13 |
| Zm00001d034492_P006 | Maize | endoplasmic reticulum, extracellular | 81.92 | 96.15 |
| HORVU5Hr1G107250.1 | Barley | cytosol | 91.02 | 94.58 |
| TraesCS5A01G448400.1 | Wheat | golgi | 91.02 | 94.58 |
| TraesCS5D01G455000.1 | Wheat | cytosol | 90.9 | 94.45 |
| Os03t0801600-01 | Rice | cytosol | 91.14 | 87.22 |
| GSMUA_Achr9P11120_001 | Banana | cytosol | 82.52 | 86.19 |
| TraesCS5B01G453000.1 | Wheat | cytosol | 91.26 | 85.16 |
| VIT_18s0001g14680.t01 | Wine grape | cytosol | 78.88 | 82.28 |
| KRH76626 | Soybean | endoplasmic reticulum | 78.64 | 81.61 |
| KRH28827 | Soybean | cytosol, endoplasmic reticulum, nucleus | 78.4 | 81.36 |
| GSMUA_Achr4P17490_001 | Banana | cytosol | 77.91 | 81.16 |
| Solyc12g089340.1.1 | Tomato | cytosol, nucleus, plastid | 77.67 | 80.91 |
| PGSC0003DMT400075420 | Potato | cytosol | 77.31 | 80.53 |
| PGSC0003DMT400058024 | Potato | cytosol | 76.33 | 79.62 |
| Solyc03g033400.2.1 | Tomato | cytosol, nucleus | 76.21 | 79.49 |
| KRH05971 | Soybean | cytosol | 76.82 | 79.32 |
| Solyc02g083560.2.1 | Tomato | cytosol | 75.97 | 79.24 |
| KRH17452 | Soybean | endoplasmic reticulum | 76.46 | 79.05 |
| PGSC0003DMT400009386 | Potato | cytosol | 75.73 | 78.99 |
| VIT_04s0023g03870.t01 | Wine grape | cytosol, mitochondrion | 79.13 | 78.18 |
| CDX87655 | Canola | cytosol | 74.27 | 77.27 |
| AT1G75850.1 | Thale cress | cytosol | 73.54 | 76.71 |
| CDY13527 | Canola | mitochondrion | 61.04 | 76.33 |
| Bra015806.1-P | Field mustard | cytosol | 74.15 | 75.71 |
| CDX73208 | Canola | cytosol | 65.29 | 75.35 |
| Bra002092.1-P | Field mustard | cytosol | 70.39 | 73.6 |
| CDY24377 | Canola | cytosol | 70.39 | 73.6 |
| CDY20826 | Canola | cytosol | 70.15 | 73.35 |
| AT2G17790.1 | Thale cress | cytosol | 69.78 | 73.06 |
| CDX73731 | Canola | cytosol | 67.11 | 70.0 |
| CDX77995 | Canola | cytosol | 66.87 | 69.75 |
| Bra036818.1-P | Field mustard | cytosol | 66.87 | 69.48 |
| AT3G51310.1 | Thale cress | cytosol | 66.38 | 69.24 |
| CDY59615 | Canola | cytosol | 66.38 | 68.63 |
| KRH15953 | Soybean | cytosol | 5.83 | 67.61 |
| CDX73207 | Canola | cytosol | 7.28 | 65.93 |
| KRH37553 | Soybean | cytosol | 8.98 | 63.79 |
| CDY13526 | Canola | cytosol | 8.74 | 60.0 |
| CDY39067 | Canola | endoplasmic reticulum, golgi | 19.9 | 55.78 |
Protein Annotations
| Gene3D:1.25.40.660 | EntrezGene:100279276 | MapMan:22.5.5.3.1 | UniProt:A0A1D6GFD6 | ProteinID:AQK62302.1 | InterPro:ARM-type_fold |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0030904 | GO:GO:0030906 | GO:GO:0042147 | PFAM:PF03635 | PIRSF:PIRSF009375 |
| PANTHER:PTHR11099 | PANTHER:PTHR11099:SF1 | SUPFAM:SSF48371 | UniParc:UPI0008453775 | InterPro:Vps35 | EnsemblPlantsGene:Zm00001d013059 |
| EnsemblPlants:Zm00001d013059_P003 | EnsemblPlants:Zm00001d013059_T003 | SEG:seg | : | : | : |
Description
Vacuolar protein sorting-associated protein 35B
Coordinates
chr5:-:3972809..3981360
Molecular Weight (calculated)
93072.2 Da
IEP (calculated)
5.056
GRAVY (calculated)
-0.163
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASTSVRV LPDGGADDEE RWLAEGIAGV QQNAFYMHRA LDSNNLKDAL KYSAQMLSEL RTSRLSPHKY YELYMRAFDE MKKLEMFFRE ETRRGSCSVV
101: DLYELVQHAG NVLPRLYLLC TVGSVYIKSK EAPAKDVLKD LVEMCRGIQH PLRGLFLRSY LSQISRDKLP DIGSEYEGDV ENINDAVEFV LQNFIEMNKL
201: WVRMQHQGPA REKEKRGKER NELRDLVGKN LHVLGQIDGV DLDMYKETVL PRILEQVVNC KDDLAQFYLM DCIIQVFPDE YHLQTLETLL SAFPQLQPSV
301: DIKTVLSQLM DRLSNYAASS PELLPEFLQV EAFAKFSNAI GKVIEAQPDM PVVGAITLYV SLLTFTLRVH PDRLDYVDQV LGACVKKLSG KAKLEDSRAT
401: KQIVALLSAP LEKYSNIVTA LELSNYPRVM DYLDNATTKV MAVVIIQSIM KNTTCISTSD KIEALFDLIK GLIKDMDGAQ DDELDEEDFK EEQNSVARLI
501: HMLHNDDPEE MLKILCTVQK HILQGGPKRL TFTVPSLVFS SLKLVRRLQG QDGDVTGEDV PATPKKIFQI LHQVFIIILH ASNFGYSIIT DAYTTIEALS
601: CVPSPELALR LYLQCAEAAN DCDLEPVAYE FFTQAFILYE EEITDSKAQI TAIHLIIGTL QRMNIFGVEN RDTLTHKTTG YSAKLLKKPD QCRAVYACSH
701: LFWTDDQDGI MDGERVLLCL KRALRIANAA QQMASATRGS SGSVTLFIEI LNKYLYFFEK GIPQITNTVI QDLIELIRTE KQSDNSVADP STEAFFSSTL
801: RYIEFQKQKG GTIGEKYEQI KTSS
101: DLYELVQHAG NVLPRLYLLC TVGSVYIKSK EAPAKDVLKD LVEMCRGIQH PLRGLFLRSY LSQISRDKLP DIGSEYEGDV ENINDAVEFV LQNFIEMNKL
201: WVRMQHQGPA REKEKRGKER NELRDLVGKN LHVLGQIDGV DLDMYKETVL PRILEQVVNC KDDLAQFYLM DCIIQVFPDE YHLQTLETLL SAFPQLQPSV
301: DIKTVLSQLM DRLSNYAASS PELLPEFLQV EAFAKFSNAI GKVIEAQPDM PVVGAITLYV SLLTFTLRVH PDRLDYVDQV LGACVKKLSG KAKLEDSRAT
401: KQIVALLSAP LEKYSNIVTA LELSNYPRVM DYLDNATTKV MAVVIIQSIM KNTTCISTSD KIEALFDLIK GLIKDMDGAQ DDELDEEDFK EEQNSVARLI
501: HMLHNDDPEE MLKILCTVQK HILQGGPKRL TFTVPSLVFS SLKLVRRLQG QDGDVTGEDV PATPKKIFQI LHQVFIIILH ASNFGYSIIT DAYTTIEALS
601: CVPSPELALR LYLQCAEAAN DCDLEPVAYE FFTQAFILYE EEITDSKAQI TAIHLIIGTL QRMNIFGVEN RDTLTHKTTG YSAKLLKKPD QCRAVYACSH
701: LFWTDDQDGI MDGERVLLCL KRALRIANAA QQMASATRGS SGSVTLFIEI LNKYLYFFEK GIPQITNTVI QDLIELIRTE KQSDNSVADP STEAFFSSTL
801: RYIEFQKQKG GTIGEKYEQI KTSS
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
Arabidopsis Description
VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.