Factsheet for Bra036818.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021277.1-P
Bra022250.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51310.1	Bra021277.1-P	AT3G17840.1	15618630
AT3G51310.1	Bra022250.1-P	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77995	Canola	cytosol	98.87	99.24
CDY59615	Canola	cytosol	98.49	97.99
AT3G51310.1	Thale cress	cytosol	88.9	89.24
KRH76626	Soybean	endoplasmic reticulum	72.76	72.67
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	72.38	72.29
Bra002092.1-P	Field mustard	cytosol	69.86	70.3
Solyc02g083560.2.1	Tomato	cytosol	69.23	69.49
PGSC0003DMT400009386	Potato	cytosol	69.1	69.37
PGSC0003DMT400058024	Potato	cytosol	68.98	69.24
Solyc03g033400.2.1	Tomato	cytosol, nucleus	68.98	69.24
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	72.64	69.06
TraesCS5A01G448400.1	Wheat	golgi	68.85	68.85
EER93269	Sorghum	cytosol	69.61	68.74
TraesCS5D01G455000.1	Wheat	cytosol	68.73	68.73
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	60.28	68.09
Zm00001d013059_P003	Maize	cytosol	69.48	66.87
Bra015806.1-P	Field mustard	cytosol	65.45	64.31
Os03t0801600-01	Rice	cytosol	68.85	63.41
TraesCS5B01G453000.1	Wheat	cytosol	68.73	61.72
KRH15953	Soybean	cytosol	5.3	59.15
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	8.7	38.98

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	EnsemblPlantsGene:Bra036818	EnsemblPlants:Bra036818.1	EnsemblPlants:Bra036818.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005771	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	GO:GO:0043231	UniProt:M4F6V8
PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI0002542CC6	InterPro:Vps35
SEG:seg	:	:	:	:	:

Description

AT3G51310 (E=0.0) VPS35C | VPS35C (VPS35 HOMOLOG C)

Coordinates

chrA09:-:25613012..25617643

Molecular Weight (calculated)

89912.3 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.204

Length

793 amino acids

Sequence
(BLAST)

001: MIADDDEKWL AAATAAVKQN AFYMQRAIDS NNLKDALKFS AQMLGELRTS KLSPHKYYEL YIRASDELRS LEMFFRDETA RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA KDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS ELEGDTETHM DALEFVLQNF TEMNKLWVRM QHQGPTREKE
201: KREKERNELR DLVMTVGKNL HILGQLEGVD LVVYRDTVLP RILEQVVNCK DELAQCYLMD CIIQVFPDDF HLQTLDVLLG ACPQLQPSVD IKMVLSGLME
301: RLSNYAASSV EALPNFLQVD AFSKLNHAIG KVVEAQVDLP ASASVTLYLF LLKFTLHVHS DRLDYVDQVL GSCVSQLSAT GKLCDDKASK QIVAFLSAPL
401: EKFNDVVTIL KLTNYPRVME YLDHDTNKTM AIIIIQSILK NDTRIATADE VDALFELIKG LIKDFDGLTD NDEIDEEDFQ EEQNSVARLV HFLYNDDPEE
501: MSKIIFRIRK HILTGGPKRL PLTIPPLVFS ALKLIRRMRG GDENPFGDDT STPQKILQLL TETVEVLSDA SASELALRLY LQCAQAANDC ELETVAYEFF
601: TKAYLLYEEE ISDSKAQVTA LRLIIGTLQR MRVFNVENRD ILTHKATGYS AKLLKKPDQC RAVYECAHLY WAEEGENLKD GERVVLCLKR AQKIADAVQK
701: MANASRGASS TGSVSLYVEL LNKYLYFLEK GNPQVTGETI QSLAELIRSE TKKAESGAGT FITSTLRYME FQRQQEDGGM SEKYQKIKME WFE

Best Arabidopsis Sequence Match ( AT3G51310.1 )
(BLAST)

001: MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE

Arabidopsis Description

VPS35CVacuolar protein sorting-associated protein 35C [Source:UniProtKB/Swiss-Prot;Acc:A8R7K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.