Factsheet for PGSC0003DMT400058024

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036789
PGSC0003DMT400074103

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51310.1	PGSC0003DMT400036789	AT3G17840.1	15618630
AT3G51310.1	PGSC0003DMT400074103	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g033400.2.1	Tomato	cytosol, nucleus	98.35	98.35
PGSC0003DMT400009386	Potato	cytosol	90.63	90.63
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	82.15	81.74
KRH76626	Soybean	endoplasmic reticulum	81.77	81.36
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	83.42	79.02
EER93269	Sorghum	cytosol	80.25	78.95
TraesCS5D01G455000.1	Wheat	cytosol	79.24	78.94
TraesCS5A01G448400.1	Wheat	golgi	79.24	78.94
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	69.62	78.35
PGSC0003DMT400075420	Potato	cytosol	78.1	78.0
Zm00001d013059_P003	Maize	cytosol	79.62	76.33
CDY24377	Canola	cytosol	75.44	75.63
Bra002092.1-P	Field mustard	cytosol	75.44	75.63
CDY20826	Canola	cytosol	75.19	75.38
AT2G17790.1	Thale cress	cytosol	74.81	75.1
Os03t0801600-01	Rice	cytosol	80.25	73.64
TraesCS5B01G453000.1	Wheat	cytosol	79.11	70.78
AT3G51310.1	Thale cress	cytosol	69.75	69.75
CDX73731	Canola	cytosol	69.11	69.11
CDX77995	Canola	cytosol	68.99	68.99
Bra036818.1-P	Field mustard	cytosol	69.24	68.98
CDY59615	Canola	cytosol	68.61	68.0
KRH15953	Soybean	cytosol	5.06	56.34
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	10.13	45.2

Protein Annotations

Gene3D:1.25.40.660	EntrezGene:102583363	MapMan:22.5.5.3.1	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0030904
GO:GO:0030906	GO:GO:0042147	UniProt:M1C203	PFAM:PF03635	EnsemblPlantsGene:PGSC0003DMG400022528	PGSC:PGSC0003DMG400022528
EnsemblPlants:PGSC0003DMT400058024	PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371	UniParc:UPI000294AD6A
InterPro:Vps35	RefSeq:XP_006343354.1	SEG:seg	:	:	:

Description

Vacuolar sorting protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022528]

Coordinates

chr3:+:3411541..3421253

Molecular Weight (calculated)

89522.2 Da

IEP (calculated)

5.174

GRAVY (calculated)

-0.230

Length

790 amino acids

Sequence
(BLAST)

001: MTPNGVEDEE KFLASGIAGI QQNAFHMHRA LDSNNLKDAL KYSAQMLSEL RTSRLSPHKY YELYMRAFDE LRKLEMFFKE ETKRGCSIVE LYELVQHAGN
101: ILPRLYLLCT VGSVYIKSKE APAKDILKDL VEMCRGIQHP LRGLFLRSYL SQVSKDKLPD IGSEYEGDAD TVVDAVEFVL QNFTEMNKLW VRMQHQGPAQ
201: EKKKREKERS ELRDLVGKNL HVLSQIEGID LEMYKETVLP RILEQVVNCK DEIAQGYLMD CMIQVFPDEY HLQTLETLLG ACPQLQPSVD IKMVLARLME
301: RLSNYAALST DVLPEFFQVE AFAKLNSAIG KVIEAQEDMP IAGVVTLYSS LLTFTLHVHP DRLDYVDQIL GACVKKLSGK GKLKDSIATK QIVALLSAPL
401: EKYKDIDTAL KLSNYPHVME HLDDTTSKEM ANVLVQTILK NKTCIATDEK VESLFELMKG LIRDLDENLH DEFDEEDFKE EQNSVSRLIQ MLHNDDPEEM
501: LKIICTVKKH IVTGGPKRLP FTVPPLIFNS LKLVRRLQNQ DENAPEEETS AIPKKIFQIL NQIIEALSSV PVPELALRLY LECAEAANDS DLEPVAYEFF
601: TQAYILYEEE ISDSKAQVTA IQLIIGTLQR MHIFGVENRD TLTHKATGYS AKLLKKPDQC KAVYSCSHLF WVDDQDSIKD GERVLLCLKR ALRIANAAQQ
701: MSNATRGSSG SVLLFIEILN KYLYFYEKGV TQITVASIQS LIELITTEMQ SENKTADPAA DALLASTLRY IQFQKDKGGA VGEKYESIKS

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.