Factsheet for Bra002092.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003049.1-P
Bra022659.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	Bra003049.1-P	AT5G53530.1	17889650
AT2G17790.1	Bra022659.1-P	AT5G53530.1	17889650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24377	Canola	cytosol	100.0	100.0
AT2G17790.1	Thale cress	cytosol	92.39	92.5
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	78.3	77.71
KRH76626	Soybean	endoplasmic reticulum	78.05	77.46
PGSC0003DMT400009386	Potato	cytosol	76.02	75.82
Solyc02g083560.2.1	Tomato	cytosol	76.02	75.82
PGSC0003DMT400058024	Potato	cytosol	75.63	75.44
Solyc03g033400.2.1	Tomato	cytosol, nucleus	75.25	75.06
TraesCS5A01G448400.1	Wheat	golgi	73.73	73.27
TraesCS5D01G455000.1	Wheat	cytosol	73.6	73.14
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	77.03	72.78
EER93269	Sorghum	cytosol	73.98	72.6
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	64.21	72.08
Zm00001d013059_P003	Maize	cytosol	73.6	70.39
Bra036818.1-P	Field mustard	cytosol	70.3	69.86
Os03t0801600-01	Rice	cytosol	74.24	67.94
Bra015806.1-P	Field mustard	cytosol	69.04	67.41
TraesCS5B01G453000.1	Wheat	cytosol	73.6	65.69
KRH15953	Soybean	cytosol	5.46	60.56
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	9.52	42.37

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra002092	EnsemblPlants:Bra002092.1	EnsemblPlants:Bra002092.1-P
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0010008	GO:GO:0015031	GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147
UniProt:M4CD11	PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371
UniParc:UPI0002543D12	InterPro:Vps35	SEG:seg	:	:	:

Description

AT2G17790 (E=0.0) VPS35A | VPS35A (VPS35 HOMOLOG A)

Coordinates

chrA10:-:11544431..11549907

Molecular Weight (calculated)

89540.2 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.178

Length

788 amino acids

Sequence
(BLAST)

001: MIADGAGEDE EKWLAAGAAA FKQNAFYMQR AIDSNNLKDA LKYSAQMLSE LRTSKLSPHK YYDLYMRAFD ELRKLEIFFM EETRRGCSVI ELYELVQHAG
101: NILPRLYLLC TAGSVYIKTK EAPAKEILKD LVEMCRGIQH PLRGLFLRSY LAQISRDKLP DIGSEYEGDA DTVTDAVEFV LLNFTEMNKL WVRMQHQGPA
201: RDKEKREKER SELRDLVGKN LHVLSQLEGV DLDMYRDTVL PRVLEQIVNC RDEIAQYYLM DCIIQVFPDE YHLQTLDVLL GACPQLQPSV DIMTVLSRLM
301: ERLSSYAALN TEVLPYFLQV EAFSKLNNAI GKVIEAQEDM PILSAVTLYS SLLKFTLHVH PDRLDYADQV LGSCIKQLSG KGKIHDTRAT KELVTLLSAP
401: LEKYNDVVIA LKLTNYPLVL DYLDSENKRV MATVIIRSIM KNKTIIATAE KVEALLELIK GLINDLDEPQ GLEVDEDDFE EEQNSVARLI HMLYSDDPEE
501: MFKIISVLKN HFLTGGPKRL KFTIPPLVVS ALKLIRRLPE EGDNPFGKEA SVSATKIFQF LNQIIEALPS APSPDLAFRL YLQCAEAANK CDEEPIAYEF
601: FTQAYILYEE EISDSKAQVT ALQLIIGTLQ RMHVFGVENR DTLTHKATGY SAKLLKKPDQ CRAVYACSHL FWLQDQETIQ DGERVLRCLK RALKIANSAQ
701: QMTSAARGST GSVTLFIEIL NKYLYFYEKG IPQVTVESVE SMIQLIKNEE SLTSDPSAES FFASTLRFME FQKQKGGVVG DRYEQIKV

Best Arabidopsis Sequence Match ( AT2G17790.1 )
(BLAST)

001: MIADGSEDEE KWLAAGAAAF KQNAFYMQRA IDSNNLKDAL KYSAQMLSEL RTSKLSPHKY YDLYMRAFDE LRKLEIFFME ETRRGCSVIE LYELVQHAGN
101: ILPRLYLLCT AGSVYIKTKE APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL LNFTEMNKLW VRMQHQGPAR
201: EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME
301: RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL
401: EKYNDVVTAL KLTNYPLVVE YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE EQNSVALLIH MLYNDDPEEM
501: FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF
601: TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ
701: VANTARGSTG SVTLFIEILN KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE RYQAIKV

Arabidopsis Description

VPS35AVacuolar protein sorting-associated protein 35A [Source:UniProtKB/Swiss-Prot;Acc:Q7X659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.