Factsheet for VIT_04s0023g03870.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g01270.t01
VIT_17s0000g02010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	VIT_16s0098g01270.t01	AT5G53530.1	17889650
AT3G51310.1	VIT_17s0000g02010.t01	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76626	Soybean	endoplasmic reticulum	81.3	85.39
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	81.06	85.14
VIT_18s0001g14680.t01	Wine grape	cytosol	80.34	84.81
Solyc02g083560.2.1	Tomato	cytosol	79.02	83.42
PGSC0003DMT400058024	Potato	cytosol	79.02	83.42
PGSC0003DMT400009386	Potato	cytosol	78.78	83.16
Solyc03g033400.2.1	Tomato	cytosol, nucleus	78.54	82.91
TraesCS5D01G455000.1	Wheat	cytosol	78.18	82.22
TraesCS5A01G448400.1	Wheat	golgi	78.18	82.22
EER93269	Sorghum	cytosol	78.18	81.2
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	68.11	80.91
Zm00001d013059_P003	Maize	cytosol	78.18	79.13
Os03t0801600-01	Rice	cytosol	79.74	77.24
CDY24377	Canola	cytosol	72.78	77.03
Bra002092.1-P	Field mustard	cytosol	72.78	77.03
CDY20826	Canola	cytosol	72.54	76.78
AT2G17790.1	Thale cress	cytosol	72.3	76.62
TraesCS5B01G453000.1	Wheat	cytosol	78.06	73.73
CDX77995	Canola	cytosol	69.06	72.91
CDX73731	Canola	cytosol	69.06	72.91
Bra036818.1-P	Field mustard	cytosol	69.06	72.64
AT3G51310.1	Thale cress	cytosol	68.59	72.41
CDY59615	Canola	cytosol	68.59	71.77
KRH15953	Soybean	cytosol	6.0	70.42
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	9.47	44.63

Protein Annotations

Gene3D:1.25.40.660	EntrezGene:100248964	wikigene:100248964	MapMan:22.5.5.3.1	InterPro:ARM-type_fold	ProteinID:CCB44337
ProteinID:CCB44337.1	UniProt:F6GWK2	EMBL:FN594959	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	EntrezGene:LOC100248964	wikigene:LOC100248964
PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371	UniParc:UPI0002108688
ArrayExpress:VIT_04s0023g03870	EnsemblPlantsGene:VIT_04s0023g03870	EnsemblPlants:VIT_04s0023g03870.t01	InterPro:Vps35	unigene:Vvi.18812	RefSeq:XP_002262862
RefSeq:XP_002262862.2	SEG:seg	:	:	:	:

Description

Vacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:F6GWK2]

Coordinates

chr4:-:20357976..20371243

Molecular Weight (calculated)

94647.1 Da

IEP (calculated)

5.907

GRAVY (calculated)

-0.235

Length

834 amino acids

Sequence
(BLAST)

001: MKLRRQRSRG SHRGIGSSVK SNATFLNPNH NPQSYREEEK RAERRMVERA EDEEKWLAAG IAGLQQNAFY MHRALDSNNL RDALKYSAQM LSELRTSRLS
101: PHKYYELYMR AFDELRKLEM FFKEEARRGC SIIDLYELVQ HAGNILPRLY LLCTVGSVYI KSKEAPAKDV LKDLVEMCRG IQHPVRGLFL RSYLSQVSRD
201: KLPDIGSEYE GGADTVMDAV EFLLQNFTEM NKLWVRMQHQ GPAREKEKRE KERSELRDLV GKNLHVLGQL EGVDLDMYKE TVLPRVLEQV VNCKDEIAQF
301: YLMDCIIQVF PDEYHLQTLE TLLGACPQLQ PSVDIKTVLS QLMERLSNYA ASSAEVLPEF LQVEAFAKLS NAIWKVIEAQ VDMPIFGAVT LYSSLLTFTL
401: HVHPDRLDYV DQVLGACVTK LSSAGKLEDS KSTKQIVALL SAPLEKYNDI VTVLKLSNYP RVMEYLDNRT NKVMAIVIIQ SIMKNKTCIA TAEKVEALFE
501: LIKGLIKDLD GDLHDELDDE DFKEEQNSVA RLIQMLYSDD PDEMLQIICA VRKHFLTGGP QRLPYTIPPL VFSSLKLIRK LQGQDENVVG EEASASPKKI
601: FQLLNQTIEA LSAVPASELA LRLYLQCAEA ANDCDLEPVA YEFFTQAYIL YEEEIADSKA QVTALHLIVG TLQRMHVFGV ENRDTLTHKA TGYSAKLLKK
701: PDQCRAVYAC SHLFWVDDQD SIRDGERVLL CLKRALRIAN AAQQMANVTR GSSGSATLFV EILNKYLYFF EKGNPQITIA AIQSLIELIT TEIQSDTMSQ
801: DPAADAFFAS TLRYIQFQKQ KGGALAEKYE SIKV

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.