CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39040
KRH41871
KRH48661
KRH56246
KRH60559
KRH62711

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	KRH56246	AT5G53530.1	17889650
AT2G17790.1	KRH62711	AT5G53530.1	17889650
AT3G51310.1	KRH39040	AT3G17840.1	15618630
AT3G51310.1	KRH41871	AT3G17840.1	15618630
AT3G51310.1	KRH48661	AT3G17840.1	15618630
AT3G51310.1	KRH60559	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37553	Soybean	cytosol	45.07	27.59
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	87.32	7.81
KRH76626	Soybean	endoplasmic reticulum	85.92	7.68
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	67.61	6.84
TraesCS5A01G448400.1	Wheat	golgi	67.61	6.05
TraesCS5D01G455000.1	Wheat	cytosol	67.61	6.05
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	70.42	6.0
EER93269	Sorghum	cytosol	66.2	5.85
Zm00001d013059_P003	Maize	cytosol	67.61	5.83
KRH05971	Soybean	cytosol	64.79	5.76
Os03t0801600-01	Rice	cytosol	69.01	5.69
KRH17452	Soybean	endoplasmic reticulum	63.38	5.65
CDY20826	Canola	cytosol	60.56	5.46
CDY24377	Canola	cytosol	60.56	5.46
Bra002092.1-P	Field mustard	cytosol	60.56	5.46
Solyc03g033400.2.1	Tomato	cytosol, nucleus	60.56	5.44
TraesCS5B01G453000.1	Wheat	cytosol	67.61	5.44
CDX77995	Canola	cytosol	59.15	5.32
Bra036818.1-P	Field mustard	cytosol	59.15	5.3
CDY59615	Canola	cytosol	59.15	5.27
AT2G17790.1	Thale cress	cytosol	57.75	5.21
Solyc02g083560.2.1	Tomato	cytosol	57.75	5.19
PGSC0003DMT400009386	Potato	cytosol	57.75	5.19
CDX73731	Canola	cytosol	57.75	5.19
PGSC0003DMT400058024	Potato	cytosol	56.34	5.06
AT3G51310.1	Thale cress	cytosol	50.7	4.56
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	0.0	0.0

Protein Annotations

MapMan:22.5.5.3.1	EMBL:ACUP02008735	EnsemblPlantsGene:GLYMA_14G121900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005829
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	UniProt:K7M787	EnsemblPlants:KRH15953	ProteinID:KRH15953
ProteinID:KRH15953.1	PFAM:PF03635	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI000296E36E	InterPro:Vps35

Description

hypothetical protein

Coordinates

chr14:+:17673707..17673992

Molecular Weight (calculated)

7884.9 Da

IEP (calculated)

7.355

GRAVY (calculated)

0.334

Length

71 amino acids

Sequence
(BLAST)

1: MIALKLSNYP RVIEYLHIPT TKVMATVIIQ SIMKNGKCIS TSEKVEALFE LIKGLIKDSD GIPNDEVILV P

Best Arabidopsis Sequence Match ( AT1G75850.2 )
(BLAST)

001: MYKETVLPRV LEQVVNCKDK LAQYYLMECI IQVFPDEYHL QTLETLLAAC TQLMPTVDTK IVLTQLMDRL SNYAASSPDV LHEFLQVEAF AKLSNAIGKV
101: IDTQLEMPIV GAMTLFVSLL TFTLRVHPDR LDYVDQVLGA CVVKLSSVPK LEDARAMKQV VALLSAPLEK YSDIVTALTL SNYPRVMDHL DDGTNKVMAM
201: LIIQSIMKTD SCISTADKVE VLFELIKGLI KDLDETNAEE LDEEDFQEEQ NSVARLIHML DNEEPEEMLK IICVVRRHLM TGGPRRLPFT VPPLVFSAVR
301: LVRQLESQGG DIAGEDSATP RKIFQILNQT IEVLTSVPCP ELALRLYLQC AEAASDCDLE PVAYEFFTQA FMLYEEEIAD SKAQVTAIHL IVGTLQRINV
401: FGVENRDTLT HKATGYSARL LKKPDQCRAV YACSHLFWVD DPDGIKDGER VLLCLRRALR IANAAQQMAS ATRGSSGPVT LFVEILNKYI YFFEKGNPHI
501: TPSDIQSLIE LINNEMQSDN GNTTIHSDPF FTSTLRYIKF IKQKGGLMGE KYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.