Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73731 | Canola | cytosol | 89.11 | 89.11 |
| CDX77995 | Canola | cytosol | 88.99 | 88.99 |
| Bra036818.1-P | Field mustard | cytosol | 89.24 | 88.9 |
| CDY59615 | Canola | cytosol | 88.86 | 88.08 |
| KRH76626 | Soybean | endoplasmic reticulum | 72.91 | 72.54 |
| KRH28827 | Soybean | cytosol, endoplasmic reticulum, nucleus | 72.53 | 72.17 |
| AT2G17790.1 | Thale cress | cytosol | 70.13 | 70.39 |
| PGSC0003DMT400058024 | Potato | cytosol | 69.75 | 69.75 |
| Solyc02g083560.2.1 | Tomato | cytosol | 69.62 | 69.62 |
| PGSC0003DMT400009386 | Potato | cytosol | 69.49 | 69.49 |
| Solyc03g033400.2.1 | Tomato | cytosol, nucleus | 69.49 | 69.49 |
| TraesCS5A01G448400.1 | Wheat | golgi | 68.86 | 68.6 |
| VIT_04s0023g03870.t01 | Wine grape | cytosol, mitochondrion | 72.41 | 68.59 |
| EER93269 | Sorghum | cytosol | 69.62 | 68.49 |
| TraesCS5D01G455000.1 | Wheat | cytosol | 68.73 | 68.47 |
| Zm00001d034492_P006 | Maize | endoplasmic reticulum, extracellular | 60.0 | 67.52 |
| Zm00001d013059_P003 | Maize | cytosol | 69.24 | 66.38 |
| AT1G75850.1 | Thale cress | cytosol | 64.56 | 64.56 |
| Os03t0801600-01 | Rice | cytosol | 68.99 | 63.3 |
| TraesCS5B01G453000.1 | Wheat | cytosol | 68.73 | 61.49 |
| KRH15953 | Soybean | cytosol | 4.56 | 50.7 |
| HORVU7Hr1G081830.7 | Barley | cytosol, endoplasmic reticulum, plastid | 8.61 | 38.42 |
Protein Annotations
| Gene3D:1.25.40.660 | MapMan:22.5.5.3.1 | EntrezGene:824294 | UniProt:A8R7K9 | EMBL:AB368490 | ProteinID:AEE78777.1 |
| ArrayExpress:AT3G51310 | EnsemblPlantsGene:AT3G51310 | RefSeq:AT3G51310 | TAIR:AT3G51310 | RefSeq:AT3G51310-TAIR-G | EnsemblPlants:AT3G51310.1 |
| TAIR:AT3G51310.1 | ProteinID:CAB62653.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005771 | GO:GO:0005794 | GO:GO:0005829 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0010008 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0030904 | GO:GO:0030906 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0043231 |
| RefSeq:NP_190699.3 | PFAM:PF03635 | PIRSF:PIRSF009375 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11099 | PANTHER:PTHR11099:SF1 |
| UniParc:UPI00015FA180 | Symbol:VPS35C | InterPro:Vps35 | SEG:seg | : | : |
Description
VPS35CVacuolar protein sorting-associated protein 35C [Source:UniProtKB/Swiss-Prot;Acc:A8R7K9]
Coordinates
chr3:-:19044331..19049454
Molecular Weight (calculated)
89409.7 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.171
Length
790 amino acids
Sequence
(BLAST)
(BLAST)
001: MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.