CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92167
CDX95816
CDY61284
CDY67567

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51310.1	CDX92167	AT3G17840.1	15618630
AT3G51310.1	CDX95816	AT3G17840.1	15618630
AT3G51310.1	CDY61284	AT3G17840.1	15618630
AT3G51310.1	CDY67567	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77995	Canola	cytosol	98.61	98.61
CDY59615	Canola	cytosol	98.23	97.37
AT3G51310.1	Thale cress	cytosol	89.11	89.11
KRH76626	Soybean	endoplasmic reticulum	73.16	72.8
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	72.78	72.42
CDY20826	Canola	cytosol	69.75	69.92
CDY24377	Canola	cytosol	69.75	69.92
Solyc02g083560.2.1	Tomato	cytosol	69.62	69.62
PGSC0003DMT400009386	Potato	cytosol	69.49	69.49
Solyc03g033400.2.1	Tomato	cytosol, nucleus	69.11	69.11
PGSC0003DMT400058024	Potato	cytosol	69.11	69.11
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	72.91	69.06
EER93269	Sorghum	cytosol	70.13	68.99
TraesCS5A01G448400.1	Wheat	golgi	69.24	68.98
TraesCS5D01G455000.1	Wheat	cytosol	69.11	68.85
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	60.89	68.52
Zm00001d013059_P003	Maize	cytosol	70.0	67.11
CDX87655	Canola	cytosol	65.95	65.78
CDX73208	Canola	cytosol	59.11	65.41
CDY13527	Canola	mitochondrion	54.43	65.25
Os03t0801600-01	Rice	cytosol	69.37	63.65
TraesCS5B01G453000.1	Wheat	cytosol	69.11	61.83
KRH15953	Soybean	cytosol	5.19	57.75
CDY13526	Canola	cytosol	7.97	52.5
CDX73207	Canola	cytosol	5.82	50.55
CDY39067	Canola	endoplasmic reticulum, golgi	17.72	47.62
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	8.61	38.42

Protein Annotations

EnsemblPlants:CDX73731	EnsemblPlantsGene:GSBRNA2T00109336001	Gene3D:1.25.40.660	GO:A0A078C9I2	GO:GO:0005575	GO:GO:0005623
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0030906	GO:GO:0042147
InterPro:Vps35	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	PFAM:PF03635	PIRSF:PIRSF009375	ProteinID:CDX73731
ProteinID:CDX73731.1	SEG:seg	UniParc:UPI0004EE6F0D	MapMan:22.5.5.3.1	:	:

Description

BnaC08g22720D

Coordinates

chrLK031799:+:2387711..2396108

Molecular Weight (calculated)

89442.7 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.198

Length

790 amino acids

Sequence
(BLAST)

001: MIADDDEKWL AAATAAVKQN AFYMQRAIDS NNLKDALKFS AQMLGELRTS KLSPHKYYEL YIRASDELRS LEMFFRDETA LGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA KDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS EVEGDTETHM DALEFVLQNF TEMNKLWVRM QHQGPTREKE
201: KREKERNELR DLVGKNLHIL GQLEGVDLVV YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVDAFS KLNHAIGKVV EAQVDLPASA SVTLYLFLLK FTLHVHSDRL DYVDQVLGSC VSQLSATGKL CDDKASKQIV AFLSAPLEKF
401: NDVVTILKLT NYPRVMEYLD NDTNKAMAII IIQSILKNDT RIATADEVDA MFELIKGLIK DFDGLADNDE IDEEDFQEEQ NSVARLVHFL YNDDPEEMSK
501: IIFRIRKHIL TGGPKRLPLT IPPLVFSALK LVRRMRGGDE NPFGDDTSTP QKILQLLTET VEVLSDVSAS ELALRLYLQC AQAANDCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDILT HKATGYSAKL LKKPDQCRAV YECAHLYWAE EGENLKDGER VVLCLKRAQK IADAVQKMAN
701: ASRGASSTGS VSLYVELLNK YLYFLEKGNP QVTGETIQSL AELIRSETKK AESGAGTFIT STLRYMEFQR QQEDGGMSEK YQKIKMEWFE

Best Arabidopsis Sequence Match ( AT3G51310.1 )
(BLAST)

001: MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE

Arabidopsis Description

VPS35CVacuolar protein sorting-associated protein 35C [Source:UniProtKB/Swiss-Prot;Acc:A8R7K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.