Factsheet for Solyc02g083560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118510.2.1
Solyc04g050240.2.1
Solyc06g068910.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17790.1	Solyc04g050240.2.1	AT5G53530.1	17889650
AT3G51310.1	Solyc03g118510.2.1	AT3G17840.1	15618630
AT3G51310.1	Solyc06g068910.2.1	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009386	Potato	cytosol	99.75	99.75
Solyc03g033400.2.1	Tomato	cytosol, nucleus	90.13	90.13
KRH76626	Soybean	endoplasmic reticulum	82.53	82.12
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	82.41	81.99
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	83.42	79.02
EER93269	Sorghum	cytosol	79.37	78.08
TraesCS5D01G455000.1	Wheat	cytosol	78.35	78.06
TraesCS5A01G448400.1	Wheat	golgi	78.35	78.06
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	78.1	78.0
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	68.99	77.64
AT2G17790.1	Thale cress	cytosol	75.95	76.24
CDY24377	Canola	cytosol	75.82	76.02
Bra002092.1-P	Field mustard	cytosol	75.82	76.02
Zm00001d013059_P003	Maize	cytosol	79.24	75.97
CDY20826	Canola	cytosol	75.57	75.76
Os03t0801600-01	Rice	cytosol	79.62	73.05
TraesCS5B01G453000.1	Wheat	cytosol	78.23	69.99
CDX73731	Canola	cytosol	69.62	69.62
AT3G51310.1	Thale cress	cytosol	69.62	69.62
CDX77995	Canola	cytosol	69.49	69.49
Bra036818.1-P	Field mustard	cytosol	69.49	69.23
CDY59615	Canola	cytosol	69.11	68.51
KRH15953	Soybean	cytosol	5.19	57.75
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	9.87	44.07

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	UniProt:K4BAM4	PFAM:PF03635
PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc02g083560.2	EnsemblPlants:Solyc02g083560.2.1
UniParc:UPI00027686AD	InterPro:Vps35	SEG:seg	:	:	:

Description

Vacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:K4BAM4]

Coordinates

chr2:+:46920454..46929620

Molecular Weight (calculated)

89546.9 Da

IEP (calculated)

4.952

GRAVY (calculated)

-0.198

Length

790 amino acids

Sequence
(BLAST)

001: MITNGVEDEE KWLAAGIAGL QQNAFYMHRA LDSNNLKDAL KYSAQMLSEL RTSKLSPHKY YELYMRAFDE LRKLEIFFRE ETNRGCSIVE LYELVQHAGN
101: ILPRLYLLCT VGSVYIKSKE APAKDILKDL VEMCRSIQHP LRGLFLRSYL SQVSRDKLPD IGSEYEGDAD TVMDAVEFVL QNFTEMNKLW VRMQHQGHAR
201: EKEKREKERS ELRDLVGKNL HVLGQIEGID LDLYKDMVLP RVLEQVVNCK DEIAQGYLMD CIIQVFPDEY HLQTLETLLG ACPQFQPSVD IKTVLARLME
301: RLSNYAALSA EVLPEFFQVE AFAKLNSAIG KVIEAQEDMP IAGVVTLYSS LLTFSLHVHP DRLDYVDQIL GACVQKLSGK GKLKDNKATK QIVALLSAPL
401: EKYKDIDTAL KLSNYPRLME NLDDSTSKEM ANVLVQNILK NKTCISTAEK VEALFELMKA LIRDLDEGVD DELDEDDFQE EQNSVAQLIQ MLHNDDPEEM
501: LKIICAVKKH ILTGGPKRLP FTVPPLIFNS LKFVRRLHSH DENVPEEESS AMPKKFFQIL NQIIEALSIV PVPELALKLY LECAEAANDS DIEPVAYEFF
601: TQAYILYEEE ISDSKAQVTA IHLIIGTLQR MHIFGVENRD TLTHKATGYS AKLLKKPDQC RAVYACSHLF WVDDQDNIKD GERVLLCLKR ALRIANAAQQ
701: MSNATRGSSG SVLLFIEILN KYLYFFEKGV SQINVASVQS LIELITTEMQ SENTTADPAA DAFFASTLRY IQFQKDKGGA VGEKFESINS

Best Arabidopsis Sequence Match ( AT2G17790.1 )
(BLAST)

001: MIADGSEDEE KWLAAGAAAF KQNAFYMQRA IDSNNLKDAL KYSAQMLSEL RTSKLSPHKY YDLYMRAFDE LRKLEIFFME ETRRGCSVIE LYELVQHAGN
101: ILPRLYLLCT AGSVYIKTKE APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL LNFTEMNKLW VRMQHQGPAR
201: EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME
301: RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL
401: EKYNDVVTAL KLTNYPLVVE YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE EQNSVALLIH MLYNDDPEEM
501: FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF
601: TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ
701: VANTARGSTG SVTLFIEILN KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE RYQAIKV

Arabidopsis Description

VPS35AVacuolar protein sorting-associated protein 35A [Source:UniProtKB/Swiss-Prot;Acc:Q7X659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.