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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • plasma membrane 5
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400036789 Potato cytosol 47.05 96.88
Solyc06g068910.2.1 Tomato plasma membrane 67.02 69.87
VIT_17s0000g02010.t01 Wine grape plasma membrane 65.96 64.88
KRH41871 Soybean endoplasmic reticulum 62.48 63.64
KRH60559 Soybean endoplasmic reticulum 62.78 63.26
Os03t0712400-02 Rice plasma membrane 20.73 60.89
KRH48661 Soybean nucleus 60.82 58.77
Solyc11g011020.1.1 Tomato nucleus 57.03 58.72
AT1G48480.1 Thale cress plasma membrane 57.94 58.47
Bra014140.1-P Field mustard plasma membrane 56.28 58.31
CDY41827 Canola plasma membrane 56.73 57.96
CDY61284 Canola plasma membrane 55.37 57.91
GSMUA_Achr2P21610_001 Banana plasma membrane 52.95 57.85
Bra021277.1-P Field mustard plasma membrane 55.22 57.75
CDX77309 Canola plasma membrane 56.43 57.74
GSMUA_Achr3P02160_001 Banana plasma membrane 41.91 57.59
CDY67567 Canola plasma membrane 50.53 57.29
CDX92167 Canola plasma membrane 54.01 57.21
Zm00001d048053_P001 Maize plasma membrane 57.64 56.95
AT3G17840.1 Thale cress plasma membrane 55.67 56.88
CDX95816 Canola plasma membrane 50.53 56.61
KRH39040 Soybean plasma membrane 55.98 56.57
Zm00001d048054_P002 Maize mitochondrion, plasma membrane 57.49 56.55
EER95247 Sorghum plasma membrane 57.64 56.53
Bra022250.1-P Field mustard plasma membrane 53.71 56.26
Os03t0223000-02 Rice plasma membrane 57.19 56.0
GSMUA_Achr8P23000_001 Banana plasma membrane 46.44 55.62
TraesCS4D01G241100.1 Wheat plasma membrane 56.58 55.57
GSMUA_Achr10P... Banana plasma membrane 48.26 55.38
GSMUA_Achr3P07440_001 Banana plasma membrane 43.12 55.02
TraesCS4A01G064200.1 Wheat plasma membrane 56.13 54.4
GSMUA_Achr6P05910_001 Banana extracellular, plasma membrane, vacuole 46.29 54.35
GSMUA_Achr9P15690_001 Banana plasma membrane 44.78 52.86
TraesCS4B01G241500.1 Wheat plasma membrane 50.23 52.7
HORVU4Hr1G007550.1 Barley plasma membrane 53.25 52.69
TraesCS4D01G046900.1 Wheat plasma membrane 53.1 52.31
GSMUA_Achr7P11160_001 Banana plasma membrane 42.21 52.25
TraesCS4B01G047100.1 Wheat plasma membrane 53.25 52.15
TraesCS4A01G267300.1 Wheat plasma membrane 52.5 51.56
EER90996 Sorghum plasma membrane 53.86 51.15
Zm00001d033745_P001 Maize plasma membrane 53.56 51.01
Solyc01g067020.2.1 Tomato plasma membrane 46.6 50.91
Zm00001d013430_P001 Maize mitochondrion 53.86 49.17
Solyc03g111670.2.1 Tomato extracellular 47.2 47.34
HORVU4Hr1G066900.1 Barley plasma membrane 37.52 46.27
Os04t0463000-01 Rice plasma membrane 46.75 46.19
Solyc06g082610.2.1 Tomato plasma membrane 43.57 46.08
TraesCS2B01G344900.1 Wheat plasma membrane 46.44 46.03
Solyc09g030450.2.1 Tomato plasma membrane 43.87 45.81
TraesCS2D01G325900.1 Wheat plasma membrane 46.29 45.74
KXG26481 Sorghum plasma membrane 46.44 45.68
TraesCS2A01G337000.1 Wheat plasma membrane 46.14 45.59
Zm00001d020403_P001 Maize plasma membrane 43.87 45.24
Solyc03g095490.2.1 Tomato plastid 42.97 44.72
Zm00001d003399_P001 Maize mitochondrion, plasma membrane 45.69 44.61
HORVU0Hr1G012920.2 Barley cytosol 34.34 44.51
KXG35590 Sorghum plasma membrane 43.72 44.26
TraesCS7D01G216400.1 Wheat plasma membrane 42.66 43.99
HORVU7Hr1G043470.2 Barley plasma membrane 42.51 43.91
TraesCS7A01G214300.1 Wheat plasma membrane 42.51 43.84
TraesCS7B01G121600.1 Wheat plasma membrane 42.51 43.84
TraesCS5D01G210800.1 Wheat plasma membrane 42.81 43.67
TraesCS5A01G205500.1 Wheat plasma membrane 42.97 43.63
TraesCS5B01G202900.1 Wheat plasma membrane 42.97 43.49
EES15012 Sorghum plasma membrane 42.21 42.6
Os09t0400500-01 Rice plasma membrane 41.75 42.59
Solyc06g048560.1.1 Tomato plasma membrane 37.97 42.33
HORVU2Hr1G080770.4 Barley mitochondrion, plasma membrane, plastid 38.58 41.53
Os08t0427600-00 Rice golgi, plasma membrane 28.14 41.52
Solyc05g009100.2.1 Tomato plasma membrane 41.45 41.02
Zm00001d032244_P001 Maize plasma membrane 41.15 40.54
Solyc08g081940.2.1 Tomato plasma membrane 39.18 40.34
Zm00001d050355_P001 Maize plasma membrane 41.45 39.42
Solyc09g008860.2.1 Tomato plasma membrane 39.94 39.11
Solyc11g069960.1.1 Tomato plasma membrane 33.43 34.8
Solyc04g008650.2.1 Tomato plasma membrane 34.34 34.03
Solyc04g078590.2.1 Tomato plasma membrane 32.83 32.48
Solyc02g093100.2.1 Tomato plasma membrane 31.01 30.78
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.3Gene3D:3.30.200.20Gene3D:3.80.10.10GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538InterPro:IPR000719InterPro:IPR001611
InterPro:IPR032675UniProt:K4BM02InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rpt
PFAM:PF00069PFAM:PF08263PFAM:PF13855ScanProsite:PS00107PFscan:PS50011PANTHER:PTHR27008
PANTHER:PTHR27008:SF19InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSUPFAM:SSF52058SUPFAM:SSF56112EnsemblPlantsGene:Solyc03g118510.2
EnsemblPlants:Solyc03g118510.2.1TMHMM:TMhelixUniParc:UPI0002765FABSEG:seg::
Description
No Description!
Coordinates
chr3:+:67353407..67356261
Molecular Weight (calculated)
71839.3 Da
IEP (calculated)
6.944
GRAVY (calculated)
-0.085
Length
661 amino acids
Sequence
(BLAST)
001: MYKFSGRMLG FYRAFMMQKL SMLLFFVLFY SITSSADLNS DRDALLALRA AVGGRTMLWN ASNTTPCNWA GVLCEDNRVT VLRLPAASLT GEIPVNTISN
101: LTKVKTISLR FNRLSGSLPS DISKLVELRN LYLQDNEFVG SVPSSFFTLH LMVRLDLSNN NFSGEIPSGF NNLTRLRTLL LENNQFSGSI PELKLSKLEQ
201: FDVSGNSLNG SIPKSLEGMP AGAFGGNSLC GKPLEVCPGE ETQPAIATGG IEIGNAHKKK KLSGGAIAGI VVGSVLGFVL LLLILFVLCR KRSGNNARSV
301: DVAAFKHPET ELSAEKSNVD AENGGGGNSG YSVAAAAAAA MTATGKGGEI GGNGIKKLIF FGSDRPFDLE DLLRASAEVL GKGTFGTAYK AVLEMGTVVA
401: VKRLKDVTIS DMEFREKIDQ VGQMNHENLV PLRAYYYSRE EKLLVYDYMP MGSLSALLHG NKGASKTPLD WKVRSGIALG TARGIEYLHS QGSTVHGNIK
501: SSNVLLTKSY DARVSDFGLA QLVGPPTSPT RVAGYRAPEV TDPRRVTQKA DVYSFGVLLL ELLTGKAPTH ALLNEEGVDL PRWVQSIVQD QWTSQVFDIE
601: LLRYQSVEEE MVQLLQLAID CSTQYPDNRP SMSDVVERIQ ELRLSSLRVT QEQSDSVNES D
Best Arabidopsis Sequence Match ( AT1G48480.1 )
(BLAST)
001: MRVFFFPNSS MAILSVFLSL LLLSLPLPST QDLNADRTAL LSLRSAVGGR TFRWNIKQTS PCNWAGVKCE SNRVTALRLP GVALSGDIPE GIFGNLTQLR
101: TLSLRLNALS GSLPKDLSTS SNLRHLYLQG NRFSGEIPEV LFSLSHLVRL NLASNSFTGE ISSGFTNLTK LKTLFLENNQ LSGSIPDLDL PLVQFNVSNN
201: SLNGSIPKNL QRFESDSFLQ TSLCGKPLKL CPDEETVPSQ PTSGGNRTPP SVEGSEEKKK KNKLSGGAIA GIVIGCVVGF ALIVLILMVL CRKKSNKRSR
301: AVDISTIKQQ EPEIPGDKEA VDNGNVYSVS AAAAAAMTGN GKASEGNGPA TKKLVFFGNA TKVFDLEDLL RASAEVLGKG TFGTAYKAVL DAVTVVAVKR
401: LKDVMMADKE FKEKIELVGA MDHENLVPLR AYYFSRDEKL LVYDFMPMGS LSALLHGNRG AGRSPLNWDV RSRIAIGAAR GLDYLHSQGT STSHGNIKSS
501: NILLTKSHDA KVSDFGLAQL VGSSATNPNR ATGYRAPEVT DPKRVSQKGD VYSFGVVLLE LITGKAPSNS VMNEEGVDLP RWVKSVARDE WRREVFDSEL
601: LSLATDEEEM MAEMVQLGLE CTSQHPDQRP EMSEVVRKME NLRPYSGSDQ VNEAD
Arabidopsis Description
RKL1Probable inactive receptor kinase At1g48480 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP77]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.