Factsheet for Solyc01g079880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 4

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118510.2.1
Solyc06g068910.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19140.1	Solyc03g118510.2.1	AT3G17840.1	15618630
AT5G19140.1	Solyc06g068910.2.1	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023208	Potato	plastid	98.31	98.31
KRH20897	Soybean	nucleus	82.2	82.2
KRH51038	Soybean	plastid	81.36	81.7
Bra023707.1-P	Field mustard	cytosol	57.63	80.95
KRH02111	Soybean	cytosol	80.93	80.93
AT5G19140.1	Thale cress	plastid	78.81	79.49
CDY47200	Canola	cytosol	78.81	79.49
CDY02581	Canola	cytosol	78.39	79.06
Solyc06g054370.1.1	Tomato	cytosol, plastid	67.8	78.43
CDX92551	Canola	cytosol	78.39	78.39
CDY13981	Canola	cytosol	78.39	78.39
Bra002216.1-P	Field mustard	cytosol	77.97	77.97
CDX88900	Canola	cytosol	77.12	77.78
CDY59022	Canola	cytosol	76.69	77.35
CDY59012	Canola	cytosol	77.97	72.73
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	80.51	70.11
TraesCS5A01G134000.1	Wheat	golgi	67.8	67.8
HORVU5Hr1G040970.1	Barley	cytosol	67.37	67.37
TraesCS5B01G131500.1	Wheat	golgi	67.37	67.37
TraesCS5D01G139300.1	Wheat	golgi, unclear	67.37	67.37
GSMUA_Achr8P08600_001	Banana	cytosol	66.95	66.95
KRH11390	Soybean	nucleus	83.05	66.89
Os11t0147800-01	Rice	cytosol	66.95	66.67
GSMUA_Achr8P00370_001	Banana	cytosol	66.53	66.53
Os12t0145100-01	Rice	cytosol, plastid	66.53	65.97
EES09256	Sorghum	cytosol	63.56	63.03
Zm00001d023376_P002	Maize	extracellular	63.14	62.6
KXG22952	Sorghum	cytosol, plastid	62.29	60.0
KRH38367	Soybean	extracellular	27.97	54.55
GSMUA_Achr11P...	Banana	cytosol	48.73	49.78
Zm00001d052493_P001	Maize	plastid	61.86	40.33
Solyc03g006490.2.1	Tomato	cytosol	41.53	38.74
Solyc09g082780.2.1	Tomato	nucleus	41.1	38.65
Solyc12g013700.1.1	Tomato	cytosol	40.68	37.8
Solyc02g078500.2.1	Tomato	unclear	40.68	37.65
Solyc02g078380.2.1	Tomato	extracellular, nucleus	38.98	36.36
CDY32292	Canola	plasma membrane	31.78	33.94
CDX80239	Canola	vacuole	30.93	31.47

Protein Annotations

EnsemblPlants:Solyc01g079880.2.1	EnsemblPlantsGene:Solyc01g079880.2	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PANTHER:PTHR11772	PANTHER:PTHR11772:SF18	PFAM:PF12481	SMART:SM01172	SUPFAM:SSF56235	UniParc:UPI0002761F43
UniProt:K4AXN3	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1:-:79026109..79030253

Molecular Weight (calculated)

25253.9 Da

IEP (calculated)

5.036

GRAVY (calculated)

0.081

Length

236 amino acids

Sequence
(BLAST)

001: MLGVFSSSIV SPPDELVAAG SRTPSPKITS DALVNRFVQS NSSAISMQIG DFVQLAYSHS KESAVLPRSF AVKDDIFCLF EGSLDNLGSL RQQYGLAKSA
101: NEVMLVIEAY KALRDRAPYP PNHVVGHLEG SFAFIVFDKS TSTLFVATDQ VGKVPLYWGI TADGYVAFAN DADLLKGACG KSLASFPQGC FYSTTVGGLR
201: SYENPKNKIT AVPATEEEIW GAKFMVEGSA VVAATE

Best Arabidopsis Sequence Match ( AT5G19140.1 )
(BLAST)

001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD

Arabidopsis Description

ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.