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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • nucleus 3
  • plastid 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g056620.2.1
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc09g082780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G15450.1 Solyc02g093290.2.1 AT2G23420.1 21798944
AT3G15450.1 Solyc03g044430.2.1 AT2G23420.1 21798944
AT3G15450.1 Solyc01g056620.2.1 AT3G62800.1 21798944
AT3G15450.1 Solyc09g082780.2.1 AT5G43830.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400057793 Potato cytosol 96.86 96.86
Solyc03g006490.2.1 Tomato cytosol 81.57 82.21
VIT_00s0586g00030.t01 Wine grape cytosol 65.49 65.23
Solyc12g013700.1.1 Tomato cytosol 62.75 62.99
VIT_00s0561g00020.t01 Wine grape cytosol 65.49 62.78
KRH10823 Soybean cytosol 61.57 62.55
KRH21498 Soybean cytosol 61.57 62.55
KRH10843 Soybean nucleus 60.39 61.35
KRH20474 Soybean nucleus 61.18 60.7
Bra027243.1-P Field mustard cytosol 59.61 60.08
CDX97669 Canola cytosol 59.61 60.08
AT3G15450.1 Thale cress cytosol 59.22 59.68
CDY53810 Canola cytosol 58.82 59.29
CDY56826 Canola cytosol 58.82 59.29
Bra019002.1-P Field mustard cytosol 58.43 58.89
CDY20112 Canola cytosol 58.43 58.89
Bra021110.1-P Field mustard cytosol 58.04 58.5
CDY26025 Canola cytosol 57.65 58.1
CDY21841 Canola plastid 44.31 56.22
Zm00001d026632_P001 Maize extracellular 57.25 55.09
Os04t0679400-01 Rice cytosol 55.69 55.04
KRH33539 Soybean cytosol 34.51 54.66
CDY21375 Canola cytosol 16.47 54.55
EES13111 Sorghum cytosol, plastid 56.08 54.37
CDY61102 Canola cytosol 17.65 54.22
KRH63496 Soybean cytosol 40.39 53.65
CDX71441 Canola cytosol, mitochondrion, plastid, vacuole 18.43 52.22
GSMUA_Achr10P... Banana cytosol 54.12 51.88
TraesCSU01G021600.1 Wheat cytosol 53.33 51.52
TraesCS2D01G600100.1 Wheat cytosol 53.33 51.52
TraesCS2A01G586500.1 Wheat cytosol 52.94 51.14
CDY07847 Canola cytosol 16.86 50.59
GSMUA_Achr3P14300_001 Banana cytosol 52.55 50.57
GSMUA_AchrUn_... Banana cytosol 47.06 49.59
KRH50016 Soybean cytosol, nucleus, plastid 60.39 49.04
Bra037807.1-P Field mustard cytosol 18.82 48.0
KRG89645 Soybean cytosol 36.47 47.94
Solyc09g082780.2.1 Tomato nucleus 42.75 43.43
Solyc01g079880.2.1 Tomato plastid 37.65 40.68
Solyc02g078380.2.1 Tomato extracellular, nucleus 38.43 38.74
Solyc06g054370.1.1 Tomato cytosol, plastid 27.45 34.31
HORVU2Hr1G118550.2 Barley cytosol 30.2 31.43
HORVU2Hr1G118570.2 Barley cytosol 23.92 22.51
Protein Annotations
EnsemblPlants:Solyc02g078500.2.1EnsemblPlantsGene:Solyc02g078500.2InterPro:DUF3700InterPro:IPR029055InterPro:Ntn_hydrolases_NPANTHER:PTHR11772
PANTHER:PTHR11772:SF15PFAM:PF12481SMART:SM01172SUPFAM:SSF56235UniParc:UPI00027682B3UniProt:K4B974
MapMan:35.1:::::
Description
No Description!
Coordinates
chr2:+:43165563..43168058
Molecular Weight (calculated)
27813.2 Da
IEP (calculated)
8.116
GRAVY (calculated)
-0.184
Length
255 amino acids
Sequence
(BLAST)
001: MLAIFKKSVV DPPMELQSPA SLQSSNKAVS PEETMKNFLA SNTNNGFSIG FMDKAFLAYS KPPSSSNAQQ RLFCGLNDIY CIFLGSLNNL WALNKQYGLS
101: KGTNEAMLVS EAYRTLRDRG PFPAHEVLKG LEGSYGFVIY DHKAGNVFVA LGADETAKMF WGIASDGSVM ISDNVDHIKG SCLKSFAPFP TGCMYHSESG
201: LKSFEHPSFK MKAMPRVDSE GAMCGACFKV DVYSKVNSMP RVGSSANWAN WGQQA
Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.